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Genome Research

Cold Spring Harbor Laboratory · ISSN 1088-9051

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Researchers publishing here

20 linked researchers

Jason Gertz Sergey V. Ulianov Stephanie C. Hicks Anik Saha Ji-Fan Hu Adam P Ostendorf Elaine R Mardis Veronica F Busa Mikaela Behm Pablo Baeza-Centurion Stefania Del Prete Michaela Frye Angela Goncalves Minh Hoang Duncan Odom Zhi John Lu Andrew J. Ashford Trevor Enright Julia Somers Olga Nikolova

Research in this journal

Fast and accurate construction of multiple sequence alignments from protein language embeddings with ARIES2026 · Minh Hoang, Isabel Armour-Garb · 0 citations

Corrigendum: Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing2026 · Lin Jia, Dehai Yu, Naifei Chen · 0 citations

Meso-scale spatial analysis of papilloma formation and clonal expansion in cancerized skin2026 · Veronica F Busa, Mikaela Behm, Pablo Baeza-Centurion · 0 citations

Scaling coalescent-based species tree inference to 100,000 taxa with STELAR-X2026 · Anik Saha, Md Shamsuzzoha Bayzid · 0 citations

Optical genome mapping identifies clinically relevant somatic structural variation in epilepsy-affected brain tissue

2026 · Anthony R Miller, James J Anderson, Maria Elena Hernandez Gonzalez · 0 citations

CircExor enables interpretable prediction of circRNA localization into extracellular vesicles2026 · Pengfei Bao, Anhao Wang, Xiaohong Lyu · 0 citations

Unifying multimodal single-cell data with a mixture-of-experts β-variational autoencoder framework2026 · Andrew J. Ashford, Trevor Enright, Julia Somers · 0 citations

Dual-contrastive learning for spatial domain identification in spatial transcriptomics with STAMGC2026 · Zhuoyue Zhang, Qianmao Wen, Yajie Meng · 0 citations

T2T genomes of Caenorhabditis nigoni and Caenorhabditis briggsae reveal divergence in satellite DNA abundance2026 · Ryan Pellow, Manitejus Kotikalapudi, Ofer Rog · 0 citations

Resolving missing human polymorphic inversions and other complex variants from ultralong read data2026 · Ricardo Moreira-Pinhal, Konstantinos Karakostis, Illya Yakymenko · 0 citations

Robust annotation and discovery of novel cell types in single-cell ATAC-seq data through cross-modal reference alignment2026 · Yushuang He, Yongyu Long, Shengquan Chen · 0 citations

Identification of differential topologically associating domains from low sequencing depth and pseudobulk chromatin contact maps2026 · Junping Li, Hebing Chen, Jiadong Lin · 0 citations

Accurate reconstruction of spatial cell-type maps and characterization of domain-specific functions based on a gene-aware heterogeneous network2026 · Zhaoyang Huang · 0 citations

A network of steroid receptor transcription factors regulates ovarian chromatin remodeling in the transition to ovulation2026 · Doan T. Dinh, Rebecca L. Robker, Darryl L. Russell · 0 citations

Bayesian inference of lineage trees by joint analysis of single-cell multimodal lineage-tracing data with BiLinT2026 · Ziwei Chen, Bingwei Zhang, Linrui Tang · 0 citations

Nuclear mitochondrial sequences in great ape telomere-to-telomere genomes2026 · Edmundo Torres-González, Marzia A. Cremona, Jessica M. Storer · 0 citations

Characterizing intra- and intertumor heterogeneity in ovarian high-grade serous carcinoma subtypes using single-cell and spatial transcriptomics2026 · Weishan Li, Jason Gertz, Adriana Ivich · 0 citations

Massively parallel characterization of adolescent idiopathic scoliosis risk variants2026 · Darius Ramkhalawan, Justin Koesterich, Fahim Rejanur Tasin · 0 citations

Fetal signatures in the 3D genome of iPSC-derived neurons and their implications for disease modeling2026 · Diana R. Zagirova, Anna D. Kononkova, Kirill V. Morozov · 0 citations

Moderated designs can balance between batch-effect mitigation and cell loss due to hashtag-assisted pooling in single-cell experiments2026 · Budha Chatterjee, Katrina Gorga, Carly Blair · 0 citations