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References from Identification of Changes in Gene Expression. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
External reference
Improved Scoring of Functional Groups From Gene Expression Data by Decorrelating GO Graph Structure
10.1093/bioinformatics/btl140 · 2006 · External reference
Differential Expression Analysis for Sequence Count Data
10.1186/gb-2010-11-10-r106 · 2010 · External reference
Analysis of Time‐Series Gene Expression Data: Methods, Challenges, and Opportunities
10.1146/annurev.bioeng.9.060906.151904 · 2007 · External reference
Efficient Sequential Designs for Destructive Life Testing with Application to Animal Serial Sacrifice Experiments
10.1093/biomet/70.2.305 · 1983 · External reference
MCPMod: An R Package for the Design and Analysis of Dose‐Finding Studies
10.18637/jss.v029.i07 · 2009 · External reference
Alcoholic and Nonalcoholic Steatohepatitis
10.1016/s1089-3261(02)00002-8 · 2002 · External reference
Creating the Gene Ontology Resource: Design and Implementation
10.1101/gr.180801 · 2001 · External reference
A New Perspective on the Dunnett Procedure: Filling the Gap Between NOEC/LOEC and ECx Concepts
10.1002/etc.686 · 2011 · External reference
Unresolved reference
2005 · External reference
Model Selection Characteristics When Using MCP‐Mod for Dose–Response Gene Expression Data
10.1002/bimj.202000250 · 2022 · External reference
10.1201/9780429246593
10.1201/9780429246593 · 1994 · External reference
Unresolved reference
2022 · External reference
Spatio‐Temporal Multiscale Analysis of Western Diet‐Fed Mice Reveals a Translationally Relevant Sequence of Events during NAFLD Progression
10.3390/cells10102516 · 2021 · External reference
Statistical Evaluation of Toxicological Bioassays ‐ A Review
10.1039/c4tx00047a · 2014 · External reference
Parameter Estimation for the Calibration and Variance Stabilization of Microarray Data
10.2202/1544-6115.1008 · 2003 · External reference
A Review of Recent Advances in Benchmark Dose Methodology
10.1111/risa.13324 · 2019 · External reference
Guidance for Statistical Design and Analysis of Toxicological Dose–Response Experiments, Based on a Comprehensive Literature Review
10.1007/s00204-023-03561-w · 2023 · External reference
Comparison of Observation‐Based and Model‐Based Identification of Alert Concentrations From Concentration‐Expression Data
10.1093/bioinformatics/btab043 · 2021 · External reference
Introduction to RNA‐Seq and its Applications to Drug Discovery and Development
10.1002/ddr.21215 · 2014 · External reference
Simultaneous Confidence Bands for Penalized Spline Estimators
10.1198/jasa.2010.tm09165 · 2010 · External reference
Human Embryonic Stem Cell‐Derived Test Systems for Developmental Neurotoxicity: A Transcriptomics Approach
10.1007/s00204-012-0967-3 · 2013 · External reference
Moderated Estimation of Fold Change and Dispersion for RNA‐seq Data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Unresolved reference
External reference
Tximeta: Reference Sequence Checksums for Provenance Identification in RNA‐seq
10.1371/journal.pcbi.1007664 · 2020 · External reference
Identifying Alert Concentrations Using a Model‐Based Bootstrap Approach
10.1111/biom.13799 · 2022 · External reference
Unresolved reference
External reference
Simultaneous Bootstrap Confidence Bands in Nonparametric Regression
10.1080/10485259808832748 · 1998 · External reference
Salmon Provides Fast and Bias‐Aware Quantification of Transcript Expression
10.1038/nmeth.4197 · 2017 · External reference
RNA Sequencing: The Teenage Years
10.1038/s41576-019-0150-2 · 2019 · External reference
Adaptive Immunity: An Emerging Player in the Progression of NAFLD
10.1038/s41575-019-0210-2 · 2020 · External reference
Estimating Transformations for Regression via Additivity and Variance Stabilization
10.1080/01621459.1988.10478610 · 1988 · External reference
Simultaneous Confidence Bands for Time‐Series Prediction Function
10.1080/10485251003592575 · 2010 · External reference
Shape‐Restricted Regression Splines with R Package splines2
10.6339/21-jds1020 · 2021 · External reference
Unresolved reference
External reference
RNA‐Seq: A Revolutionary Tool for Transcriptomics
10.1038/nrg2484 · 2009 · External reference
