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References from The Geometry of Allostery: Quantifying Pathway Organization in Protein Networks. Local targets link to admitted publications; unresolved targets remain external evidence.
Novel Graph Theoretical Approach to Heteroatoms in Quantitative Structure‐Activity Relationships
10.1016/0169-7439(91)80051-q · 1991 · External reference
M. Randic, Resistance Distance
10.1007/bf01164627 · 1993 · External reference
Direct Evaluation of Thermal Fluctuations in Proteins Using a Single‐Parameter Harmonic Potential
10.1016/s1359-0278(97)00024-2 · 1997 · External reference
Gaussian Dynamics of Folded Proteins
10.1103/physrevlett.79.3090 · 1997 · External reference
Small‐World Communication of Residues and Significance for Protein Dynamics
10.1016/s0006-3495(04)74086-2 · 2004 · External reference
Evolutionarily Conserved Networks of Residues Mediate Allosteric Communication in Proteins
10.1038/nsb881 · 2003 · External reference
Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability
10.1103/physrevlett.80.2733 · 1998 · External reference
Shedding Light on Protein–Ligand Binding by Graph Theory: The Topological Nature of Allostery
10.1016/j.bpc.2012.03.001 · 2012 · External reference
The “Violin Model”: Looking at Community Networks for Dynamic Allostery
10.1063/5.0138175 · 2023 · External reference
Allosteric Pathway Identification Through Network Analysis: From Molecular Dynamics Simulations to Interactive 2D and 3D Graphs
10.1039/c4fd00024b · 2014 · External reference
From Quantum Chemistry to Networks in Biology: A Graph Spectral Approach to Protein Structure Analyses
10.1021/acs.jcim.9b00002 · 2019 · External reference
Unresolved reference
2020 · External reference
Elucidation of Conserved Long‐Range Interaction Networks in Proteins and Their Significance in Determining Protein Topology
10.1016/j.physa.2006.01.062 · 2006 · External reference
Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks
10.1371/journal.pone.0076339 · 2013 · External reference
10.1371/annotation/343bf260‐f6ff‐48a2‐93b2‐3cc79af518a9
10.1371/annotation/343bf260‐f6ff‐48a2‐93b2‐3cc79af518a9 · External reference
The Latent Geometry of the Human Protein Interaction Network
10.1093/bioinformatics/bty206 · 2018 · External reference
Protein Structure: Insights From Graph Theory
10.1142/s0219633602000117 · 2002 · External reference
A Network Representation of Protein Structures: Implications for Protein Stability
10.1529/biophysj.105.064485 · 2005 · External reference
Signal Propagation in Proteins and Relation to Equilibrium Fluctuations
2007 · External reference
An Optimal Distance Cutoff for Contact‐Based Protein Structure Networks Using Side‐Chain Centers of Mass
10.1038/s41598-017-01498-6 · 2017 · External reference
Intra and Inter‐Molecular Communications Through Protein Structure Network
10.2174/138920309787847590 · 2009 · External reference
Network‐Based Strategies for Protein Characterization
10.1016/bs.apcsb.2021.05.001 · 2021 · External reference
Einstein Model of a Graph to Characterize Protein Folded/Unfolded States
10.3390/molecules28186659 · 2023 · External reference
A Combinatorial Proof of the All Minors Matrix Tree Theorem
10.1137/0603033 · 1982 · External reference
On Coefficients of the Characteristic Polynomial of the Laplace Matrix of a Weighted Digraph and the All Minors Theorem
10.1007/s10958-016-2695-3 · 2016 · External reference
Generalizing the Gaussian Network Model: Spanning‐Tree Thermodynamics Shows Entropy‐Driven KRAS Activation
2026 · External reference
Spanning‐Tree Thermostatistics of Protein Allostery: An Exact Kirchhoff Framework With Application to Oncogenic KRAS
10.1088/1478-3975/ae9e79 · 2026 · External reference
Origins of Allostery and Evolvability in Proteins: A Case Study
10.1016/j.cell.2016.05.047 · 2016 · External reference
Unresolved reference
1993 · External reference
10.1017/cbo9781139020411
10.1017/cbo9781139020411 · 2012 · External reference
