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References from Antimicrobial resistance profiles and genomic diversity of vaginal Prevotella bivia isolates from South African women, including the first report of nimK in South African vaginal P. bivia isolates. Local targets link to admitted publications; unresolved targets remain external evidence.
Vaginal microbiome of reproductive-age women
10.1073/pnas.1002611107 · 2011 · External reference
Prevalence, risk factors, and adverse outcomes of bacterial vaginosis among pregnant women: a systematic review
10.1186/s12884-025-07144-8 · 2025 · External reference
Lactobacillus-Deficient Cervicovaginal Bacterial Communities are Associated with Increased HIV Acquisition in Young South African Women
10.1016/j.immuni.2016.12.013 · 2017 · External reference
Prevalent bacterial vaginosis infection – a risk factor for incident sexually transmitted infections in women in Durban, South Africa
10.1177/0956462415616038 · 2016 · External reference
High recurrence rates of bacterial vaginosis over the course of 12 months after oral metronidazole therapy and factors associated with recurrence
10.1086/503780 · 2006 · External reference
Three metronidazole-resistant Prevotella bivia strains harbour a mobile element, encoding a novel nim gene, nimK, and an efflux small MDR transporter
10.1093/jac/dky236 · 2018 · External reference
Antimicrobial susceptibility profiles of anaerobic bacteria, isolated from human clinical specimens, within different European and surrounding countries. A joint ESGAI study
10.1016/j.anaerobe.2019.102111 · 2020 · External reference
Anaerobic Gram-Negative Bacteria: Role as a Reservoir of Antibiotic Resistance
10.3390/antibiotics12050942 · 2023 · External reference
The global epidemiology of bacterial vaginosis: a systematic review
10.1016/j.ajog.2013.05.006 · 2013 · External reference
An open‐label, randomized crossover study to evaluate the acceptability and preference for contraceptive options in female adolescents, 15 to 19 years of age in Cape Town, as a proxy for HIV prevention methods (UChoose)
10.1002/jia2.25626 · 2020 · External reference
Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial
10.1038/s41467-020-19382-9 · 2020 · External reference
Reliability of diagnosing bacterial vaginosis is improved by a standardized method of gram stain interpretation
10.1128/jcm.29.2.297-301.1991 · 1991 · External reference
Comparison of different medium bases for the semiquantitative isolation of anaerobes from vaginal secretions
10.1128/jcm.28.3.455-457.1990 · 1990 · External reference
Hemin and Vitamin K Compounds as Required Factors for the Cultivation of Certain Strains of Bacteroides melaninogenicus
10.1128/jb.80.2.164-170.1960 · 1960 · External reference
16S ribosomal DNA amplification for phylogenetic study
10.1128/jb.173.2.697-703.1991 · 1991 · External reference
Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces
10.1128/aem.70.12.7220-7228.2004 · 2004 · External reference
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
10.1073/pnas.82.20.6955 · 1985 · External reference
BLAST+: architecture and applications
10.1186/1471-2105-10-421 · 2009 · External reference
NCBI RefSeq: reference sequence standards through 25 years of curation and annotation
10.1093/nar/gkae1038 · 2025 · External reference
Unresolved reference
External reference
Unresolved reference
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MultiQC: summarize analysis results for multiple tools and samples in a single report
10.1093/bioinformatics/btw354 · 2016 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Using SPAdes De Novo Assembler
10.1002/cpbi.102 · 2020 · External reference
Versatile genome assembly evaluation with QUAST-LG
10.1093/bioinformatics/bty266 · 2018 · External reference
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning
10.1038/s41592-023-01940-w · 2023 · External reference
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification
2021 · External reference
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
10.1371/journal.pcbi.1007732 · 2020 · External reference
10.32942/x2p62n
10.32942/x2p62n · External reference
ModelFinder: fast model selection for accurate phylogenetic estimates
10.1038/nmeth.4285 · 2017 · External reference
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
10.1093/bioinformatics/btl529 · 2007 · External reference
Unresolved reference
External reference
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
10.1038/s41598-021-91456-0 · 2021 · External reference
The comprehensive antibiotic resistance database
10.1128/aac.00419-13 · 2013 · External reference
ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
2022 · External reference
ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
10.1128/aac.01310-13 · 2014 · External reference
VFDB: a reference database for bacterial virulence factors
10.1093/nar/gki008 · 2005 · External reference
The emergence of metronidazole-resistant Prevotella bivia harboring nimK gene in Japan
10.1128/spectrum.00562-24 · 2024 · External reference
Identification of intrinsically metronidazole-resistant clades of Gardnerella vaginalis
10.1016/j.diagmicrobio.2015.10.006 · 2016 · External reference
Antimicrobial susceptibility and clinical findings of significant anaerobic bacteria in southern Spain
10.1016/j.anaerobe.2019.05.007 · 2019 · External reference
Antimicrobial Susceptibility Profile of Rare Anaerobic Bacteria
10.3390/antibiotics12010063 · 2022 · External reference
Metronidazole Resistance in Prevotella spp. and Description of a New nim Gene in Prevotella baroniae
10.1128/aac.01003-09 · 2010 · External reference
Susceptibility of bacterial vaginosis (BV)-associated bacteria to secnidazole compared to metronidazole, tinidazole and clindamycin
10.1016/j.anaerobe.2017.05.005 · 2017 · External reference
Antimicrobial susceptibility patterns of anaerobic bacteria at an Irish University Hospital over a ten-year period (2010–2020)
10.1016/j.anaerobe.2021.102497 · 2022 · External reference
Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole
10.1128/jcm.43.9.4492-4497.2005 · 2005 · External reference
Prevalence of antimicrobial resistance genes in Bacteroides spp. and Prevotella spp. Dutch clinical isolates
10.1016/j.cmi.2019.02.017 · 2019 · External reference
Mechanisms of Resistance to Macrolides and Lincosamides: Nature of the Resistance Elements and Their Clinical Implications
10.1086/324626 · 2002 · External reference
Metronidazole resistance and nim genes in anaerobes: A review
10.1016/j.anaerobe.2018.10.004 · 2019 · External reference
Structure and Mechanism of the Lincosamide Antibiotic Adenylyltransferase LinB
10.1016/j.str.2009.10.013 · 2009 · External reference
Doxycycline Prophylaxis for Bacterial Sexually Transmitted Infections
10.1093/cid/ciz866 · 2020 · External reference
Susceptibility of endometrial isolates recovered from women with clinical pelvic inflammatory disease or histological endometritis to antimicrobial agents
10.1016/j.anaerobe.2019.02.005 · 2019 · External reference
Tetracycline Antibiotics: Mode of Action, Applications, Molecular Biology, and Epidemiology of Bacterial Resistance
10.1128/mmbr.65.2.232-260.2001 · 2001 · External reference
Regulation of CTnDOT Conjugative Transfer Is a Complex and Highly Coordinated Series of Events
10.1128/mbio.00569-13 · 2013 · External reference
Genetic and Structural Analysis of the Bacteroides Conjugative Transposon CTn341
10.1128/jb.187.8.2858-2869.2005 · 2005 · External reference
Identification of cfxA gene variants and susceptibility patterns in β-lactamase-producing Prevotella strains
10.1016/j.anaerobe.2022.102688 · 2023 · External reference
A Structure-Based Classification of Class A β-Lactamases, a Broadly Diverse Family of Enzymes
10.1128/cmr.00019-15 · 2016 · External reference
