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References from Associations between diet and the gut microbiome in brood-parasitic nestlings: Common Cuckoos reared by three host species. Local targets link to admitted publications; unresolved targets remain external evidence.
Scrutinizing key steps for reliable metabarcoding of environmental samples
10.1111/2041-210x.12849 · 2018 · External reference
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
10.1093/bioinformatics/btz859 · 2020 · External reference
Gut microbiome composition better reflects host phylogeny than diet diversity in breeding wood-warblers
10.1111/mec.16762 · 2023 · External reference
Seasonal shifts in the gut microbiome indicate plastic responses to diet in wild geladas
10.1186/s40168-020-00977-9 · 2021 · External reference
Gephi: An open source software for exploring and manipulating networks
10.1609/icwsm.v3i1.13937 · 2009 · External reference
Intra- and interindividual variations mask interspecies variation in the microbiota of sympatric Peromyscus populations
10.1128/aem.02303-14 · 2015 · External reference
Controlling the false discovery rate: A practical and powerful approach to multiple testing
10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin
10.1186/s40168-018-0470-z · 2018 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
10.1038/s41587-019-0209-9 · 2019 · External reference
DADA2: High-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · 2016 · External reference
Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests
10.1186/s40168-020-00896-9 · 2020 · External reference
The impact of the gut microbiota on human health: An integrative view
10.1016/j.cell.2012.01.035 · 2012 · External reference
UpSetR: an R package for the visualization of intersecting sets and their properties
10.1093/bioinformatics/btx364 · 2017 · External reference
A time-lagged association between the gut microbiome, nestling weight and nestling survival in wild Great Tits
10.1111/1365-2656.13428 · 2021 · External reference
Unresolved reference
2000 · External reference
Bacterial microbiota similarity between predators and prey in a blue tit trophic network
10.1038/s41396-020-00836-3 · 2021 · External reference
Habitat shapes diversity of gut microbiomes in a wild population of blue tits Cyanistes caeruleus
10.1111/jav.02829 · 2022 · External reference
Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species
2017 · External reference
HMMER web server: interactive sequence similarity searching
10.1093/nar/gkr367 · 2011 · External reference
CD-HIT: accelerated for clustering the next-generation sequencing data
10.1093/bioinformatics/bts565 · 2012 · External reference
The critical role of dietary foliage in maintaining the gut microbiome and metabolome of folivorous sifakas
10.1038/s41598-018-32759-7 · 2018 · External reference
The functionality of the gastrointestinal microbiome in non-human animals
10.1186/s40168-015-0113-6 · 2015 · External reference
Food matters: how the microbiome and gut-brain interaction might impact the development and course of anorexia nervosa
10.1007/s00787-017-0945-7 · 2017 · External reference
Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater)
10.7717/peerj.321 · 2014 · External reference
Habitat-dependent prey availability and offspring provisioning explain an ecological trap in a migratory bird
10.1111/1365-2435.12077 · 2013 · External reference
Eviction behaviour of the common cuckoo Cuculus canorus chicks
10.1111/j.2007.0908-8857.03901.x · 2007 · External reference
Diet drives convergent evolution of gut microbiomes in bamboo-eating species
10.1007/s11427-020-1750-7 · 2021 · External reference
Gene and translation initiation site prediction in metagenomic sequences
10.1093/bioinformatics/bts429 · 2012 · External reference
Age and sex-associated variation in the multi-site microbiome of an entire social group of free-ranging rhesus macaques
10.1186/s40168-021-01009-w · 2021 · External reference
Rapid isolation of DNA from dry and fresh samples of plants producing large amounts of secondary metabolites and essential oils
10.1023/a:1007528101452 · 1999 · External reference
The gut microbiota of brood parasite and host nestlings reared within the same environment: Disentangling genetic and environmental effects
10.1038/s41396-020-0719-y · 2020 · External reference
Dietary regulation of immunity
10.1016/j.immuni.2020.08.013 · 2020 · External reference
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
10.1093/bioinformatics/btv033 · 2015 · External reference
The plasticity of gut microbiota contributes to inter-region dietary differences adaptation of ungulates in the Qinghai-Tibet Plateau
10.1128/msystems.00422-25 · 2025 · External reference
Microeco: an R package for data mining in microbial community ecology
10.1093/femsec/fiaa255 · 2021 · External reference
An updated list of parasitic cuckoos and their hosts in China
10.1016/j.avrs.2025.100249 · 2025 · External reference
Using candlers to determine the incubation stage of passerine eggs
1996 · External reference
Function and functional redundancy in microbial systems
10.1038/s41559-018-0519-1 · 2018 · External reference
Geographic patterns of insect diversity across China's nature reserves: The roles of niche conservatism and range overlapping
10.1002/ece3.6097 · 2020 · External reference
Costs of breeding far away from neighbors: Isolated host nests are more vulnerable to cuckoo parasitism
10.1016/j.beproc.2018.07.017 · 2018 · External reference
FLASH: Fast length adjustment of short reads to improve genome assemblies
10.1093/bioinformatics/btr507 · 2011 · External reference
A taxonomic review of obligate and facultative interspecific avian brood parasitism
2017 · External reference
Foraging niche segregation in Malaysian babblers (Family: Timaliidae)
10.1371/journal.pone.0172836 · 2017 · External reference
Timing matters: Age-dependent impacts of the social environment and host selection on the avian gut microbiota
10.1186/s40168-022-01401-0 · 2022 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
10.1126/science.1198719 · 2011 · External reference
Salmon provides fast and bias-aware quantification of transcript expression
10.1038/nmeth.4197 · 2017 · External reference
Microbiome structural and functional interactions across host dietary niche space
10.1093/icb/icx011 · 2017 · External reference
The spider cuticle: a remarkable material toolbox for functional diversity
2021 · External reference
Metabarcoding of fecal pellets in wild muskox populations reveals negative relationships between microbiome and diet alpha diversity
10.1002/ece3.10192 · 2023 · External reference
Shotgun metagenomics, from sampling to analysis
10.1038/nbt.3935 · 2017 · External reference
Vsearch: a versatile open source tool for metagenomics
10.7717/peerj.2584 · 2016 · External reference
The gut microbiota in human energy homeostasis and obesity
10.1016/j.tem.2015.07.002 · 2015 · External reference
Host avian species and environmental conditions influence the microbial ecology of brood parasitic brown-headed cowbird nestlings: What rules the roost?
10.1111/mec.17289 · 2024 · External reference
Differences in intestinal microbiota between avian brood parasites and their hosts
10.1111/j.1095-8312.2008.01127.x · 2009 · External reference
Gut microbiota of great spotted cuckoo nestlings is a mixture of those of their foster magpie siblings and of cuckoo adults
10.3390/genes9080381 · 2018 · External reference
Bacterial diversity at the cloaca relates to an immune response in magpie Pica pica and to body condition of great spotted cuckoo Clamator glandarius nestlings
10.1111/j.1600-048x.2008.04471.x · 2009 · External reference
Gut microbiota in a host-brood parasite system: insights from common cuckoos raised by two warbler species
10.1093/femsec/fiaa143 · 2020 · External reference
Variation in diet composition and its relation to gut microbiota in a passerine bird
10.1038/s41598-022-07672-9 · 2022 · External reference
Metagenomic biomarker discovery and explanation
10.1186/gb-2011-12-6-r60 · 2011 · External reference
Repeated sampling of individuals reveals impact of tropical and temperate habitats on microbiota of a migratory bird
10.1111/mec.16170 · 2021 · External reference
Unresolved reference
2017 · External reference
Temporal variations in the gut microbiota of the globally endangered Sichuan Partridge (Arborophila rufipectus): Implications for adaptation to seasonal dietary change and conservation
10.1128/aem.00747-23 · 2023 · External reference
DNA metabarcoding of nestling feces reveals provisioning of aquatic prey and resource partitioning among Neotropical migratory songbirds in a riparian habitat
10.1007/s00442-018-4136-0 · 2018 · External reference
An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides
10.1126/science.1192231 · 2010 · External reference
Human microbiome myths and misconceptions
10.1038/s41564-023-01426-7 · 2023 · External reference
Diet drives the gut microbiome composition and assembly processes in winter migratory birds in the Poyang Lake wetland, China
2022 · External reference
Carbohydrate-active enzymes (CAZymes) in the gut microbiome
10.1038/s41579-022-00712-1 · 2022 · External reference
Unresolved reference
2016 · External reference
Covariation of the fecal microbiome with diet in nonpasserine birds
10.1128/msphere.00308-21 · 2021 · External reference
Biogeographical patterns of soil microbial community as influenced by soil characteristics and climate across Chinese forest biomes
10.1016/j.apsoil.2017.11.019 · 2018 · External reference
Oriental Reed Warblers do not abandon Common Cuckoo chicks during prolonged nestling periods
10.1016/j.avrs.2024.100190 · 2024 · External reference
The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks
10.1093/nar/gkt1209 · 2014 · External reference
Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
10.1038/s41467-019-10191-3 · 2019 · External reference
Dynamics of gut microbiota in Japanese Tits (Parus minor) across developmental stages: Composition, diversity, and associations with body condition
10.3390/microorganisms13122840 · 2025 · External reference
Plasticity of the gut microbiome of golden snub-nosed monkeys (Rhinopithecus roxellana) in response to seasonal variation in diet
10.1038/s41522-025-00806-7 · 2025 · External reference
Precisely targeting host activity for parasitism by Common Cuckoos
10.1016/j.avrs.2026.100344 · 2026 · External reference
Nest desertion as an anti-parasitism strategy in hosts selects for late egg-laying behavior in cuckoos
10.1016/j.isci.2023.108156 · 2023 · External reference
Selecting the best: Interspecific and age-related diet differences among sympatric steppe passerines
10.1016/j.avrs.2023.100151 · 2023 · External reference
