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References from Intrinsically disordered proteins in the nucleus of human cells. Local targets link to admitted publications; unresolved targets remain external evidence.
Miniseries: illustrating the machinery of life: eukaryotic cell panorama
10.1002/bmb.20494 · 2011 · External reference
Unresolved reference
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The functional architecture of the nucleus as analysed by ultrastructural cytochemistry
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Nuclear domains
10.1242/jcs.114.16.2891 · 2001 · External reference
Protein disorder and the evolution of molecular recognition: theory, predictions and observations
1998 · External reference
Intrinsically unstructured proteins: re-assessing the protein structure–function paradigm
10.1006/jmbi.1999.3110 · 1999 · External reference
Why are “natively unfolded” proteins unstructured under physiologic conditions?
10.1002/1097-0134(20001115)41:3<415::aid-prot130>3.0.co;2-7 · 2000 · External reference
Intrinsically disordered protein
10.1016/s1093-3263(00)00138-8 · 2001 · External reference
Intrinsically unstructured proteins
10.1016/s0968-0004(02)02169-2 · 2002 · External reference
Natively disordered proteins
2005 · External reference
Understanding protein non-folding
10.1016/j.bbapap.2010.01.017 · 2010 · External reference
Intrinsic protein disorder in complete genomes
2000 · External reference
Thousands of proteins likely to have long disordered regions
1998 · External reference
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
10.1016/j.jmb.2004.02.002 · 2004 · External reference
Comparing and combining predictors of mostly disordered proteins
10.1021/bi047993o · 2005 · External reference
Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life
10.1080/07391102.2012.675145 · 2012 · External reference
D(2)P(2): database of disordered protein predictions
10.1093/nar/gks1226 · 2013 · External reference
Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life
10.1007/s00018-014-1661-9 · 2015 · External reference
Intrinsic disorder in cell-signaling and cancer-associated proteins
10.1016/s0022-2836(02)00969-5 · 2002 · External reference
Flexible nets: the roles of intrinsic disorder in protein interaction networks
10.1111/j.1742-4658.2005.04948.x · 2005 · External reference
Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling
10.1002/jmr.747 · 2005 · External reference
Intrinsic disorder and functional proteomics
10.1529/biophysj.106.094045 · 2007 · External reference
Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions
10.1021/pr060393m · 2007 · External reference
Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins
10.1021/pr060394e · 2007 · External reference
Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions
10.1021/pr060392u · 2007 · External reference
Subnuclear organelles: new insights into form and function
10.1016/j.tcb.2005.11.005 · 2006 · External reference
The Nuclear Protein Database (NPD): sub-nuclear localisation and functional annotation of the nuclear proteome
10.1093/nar/gkg018 · 2003 · External reference
PONDR-FIT: a meta-predictor of intrinsically disordered amino acids
10.1016/j.bbapap.2010.01.011 · 2010 · External reference
Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes
10.1039/b719168e · 2008 · External reference
CDF it all: consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions
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Improving protein order-disorder classification using charge-hydropathy plots
10.1186/1471-2105-15-s17-s4 · 2014 · External reference
MobiDB: a comprehensive database of intrinsic protein disorder annotations
10.1093/bioinformatics/bts327 · 2012 · External reference
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins
10.1093/nar/gku982 · 2015 · External reference
ESpritz: accurate and fast prediction of protein disorder
10.1093/bioinformatics/btr682 · 2012 · External reference
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
10.1093/bioinformatics/bti541 · 2005 · External reference
Protein disorder prediction: implications for structural proteomics
10.1016/j.str.2003.10.002 · 2003 · External reference
GlobPlot: exploring protein sequences for globularity and disorder
10.1093/nar/gkg519 · 2003 · External reference
Exploiting heterogeneous sequence properties improves prediction of protein disorder
10.1002/prot.20735 · 2005 · External reference
Length-dependent prediction of protein intrinsic disorder
2006 · External reference
RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
10.1093/bioinformatics/bti534 · 2005 · External reference
Sequence complexity of disordered protein
10.1002/1097-0134(20010101)42:1<38::aid-prot50>3.0.co;2-3 · 2001 · External reference
PrDOS: prediction of disordered protein regions from amino acid sequence
10.1093/nar/gkm363 · 2007 · External reference
Prediction of protein binding regions in disordered proteins
10.1371/journal.pcbi.1000376 · 2009 · External reference
ANCHOR: web server for predicting protein binding regions in disordered proteins
10.1093/bioinformatics/btp518 · 2009 · External reference
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
10.1016/j.jmb.2005.01.071 · 2005 · External reference
A majority of the cancer/testis antigens are intrinsically disordered proteins
10.1002/jcb.23252 · 2011 · External reference
Functional consequences of preorganized helical structure in the intrinsically disordered cell-cycle inhibitor p27(Kip1)
10.1021/bi015763t · 2002 · External reference
Pre-structured motifs in the natively unstructured preS1 surface antigen of hepatitis B virus
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Local structural elements in the mostly unstructured transcriptional activation domain of human p53
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Transient structure of the amyloid precursor protein cytoplasmic tail indicates preordering of structure for binding to cytosolic factors
10.1021/bi992580m · 2000 · External reference
Structural preordering in the N-terminal region of ribosomal protein S4 revealed by heteronuclear NMR spectroscopy
10.1021/bi0013391 · 2000 · External reference
Preformed secondary structure drives the association reaction of GCN4-p1, a model coiled-coil system
10.1006/jmbi.2000.3507 · 2000 · External reference
Predicting binding regions within disordered proteins
1999 · External reference
Coupled folding and binding with alpha-helix-forming molecular recognition elements
10.1021/bi050736e · 2005 · External reference
Mining alpha-helix-forming molecular recognition features with cross species sequence alignments
10.1021/bi7012273 · 2007 · External reference
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
10.1093/nar/gkq973 · 2011 · External reference
Evidence for dynamically organized modularity in the yeast protein–protein interaction network
10.1038/nature02555 · 2004 · External reference
From molecular to modular cell biology
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Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks
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Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
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What properties characterize the hub proteins of the protein–protein interaction network of Saccharomyces cerevisiae?
10.1186/gb-2006-7-6-r45 · 2006 · External reference
Disorder and sequence repeats in hub proteins and their implications for network evolution
10.1021/pr060171o · 2006 · External reference
Intrinsic unstructuredness and abundance of PEST motifs in eukaryotic proteomes
10.1002/prot.20746 · 2006 · External reference
The RNA 3′ cleavage factors CstF 64kDa and CPSF 100kDa are concentrated in nuclear domains closely associated with coiled bodies and newly synthesized RNA
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Cajal bodies: the first 100 years
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Natively unfolded human prothymosin alpha adopts partially folded collapsed conformation at acidic pH
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Zn(2+)-mediated structure formation and compaction of the “natively unfolded” human prothymosin alpha
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Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II
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Regional and temporal specialization in the nucleus: a transcriptionally-active nuclear domain rich in PTF, Oct1 and PIKA antigens associates with specific chromosomes early in the cell cycle
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Promoter-specific activation of RNA polymerase II transcription by Sp1
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Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences
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Intrinsic disorder in transcription factors
10.1021/bi0602718 · 2006 · External reference
Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation
10.1016/j.jmb.2006.04.016 · 2006 · External reference
Oncogenic partnerships: EWS–FLI1 protein interactions initiate key pathways of Ewing׳s sarcoma
10.1158/1078-0432.ccr-09-2261 · 2010 · External reference
HSF transcription factor family, heat shock response, and protein intrinsic disorder
10.2174/138920312799277956 · 2012 · External reference
Structures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein–DNA recognition
10.1074/jbc.272.12.7801 · 1997 · External reference
NMR structure of transcription factor Sp1 DNA binding domain
10.1021/bi048438p · 2004 · External reference
Review: perinucleolar structures
10.1006/jsbi.2000.4247 · 2000 · External reference
Sam68, the KH domain-containing superSTAR
2003 · External reference
The RNA-binding protein Sam68 is a multifunctional player in human cancer
10.1530/erc-11-0041 · 2011 · External reference
Sam68 functions in nuclear export and translation of HIV-1 RNA
10.4161/rna.6.4.8920 · 2009 · External reference
Screening protein—single stranded RNA complexes by NMR spectroscopy for structure determination
10.1016/j.ymeth.2013.09.018 · 2014 · External reference
Structural basis for homodimerization of the Src-associated during mitosis, 68-kDa protein (Sam68) Qua1 domain
10.1074/jbc.m110.126185 · 2010 · External reference
Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of Sam68
10.1016/j.str.2011.07.013 · 2011 · External reference
Macromolecular domains within the cell nucleus
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Mechanism of ATP turnover inhibition in the EJC
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Chromosome territories—a functional nuclear landscape
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Chromosome territories
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The role of chromatin during transcription
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Chromatin structure: a repeating unit of histones and DNA
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Crystal structure of the nucleosome core particle at 2.8A resolution
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Chromatin higher-order structures and gene regulation
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EM measurements define the dimensions of the “30-nm” chromatin fiber: evidence for a compact, interdigitated structure
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The language of covalent histone modifications
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Code of silence
10.1038/35104721 · 2001 · External reference
Cracking the histone code: one, two, three methyls, you׳re out!
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The key to development: interpreting the histone code?
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X inactivation and the complexities of silencing a sex chromosome
10.1016/j.ceb.2009.04.012 · 2009 · External reference
Specific patterns of histone marks accompany X chromosome inactivation in a marsupial
10.1007/s10577-009-9020-7 · 2009 · External reference
Crosstalk between histone modifications during the DNA damage response
10.1016/j.tcb.2009.03.001 · 2009 · External reference
Molecular signals of epigenetic states
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Histone modifications: crucial elements for damage response and chromatin restoration
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Regulation of chromatin by histone modifications
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Dynamic interplay between histone H3 modifications and protein interpreters: emerging evidence for a “histone language”
10.1002/cbic.201000474 · 2011 · External reference
Histone tyrosine phosphorylation comes of age
10.4161/epi.6.2.13589 · 2011 · External reference
Covalent histone modifications—miswritten, misinterpreted and mis-erased in human cancers
10.1038/nrc2876 · 2010 · External reference
Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics
10.1021/ja1111964 · 2011 · External reference
The N-terminal tails of the H2A–H2B histones affect dimer structure and stability
10.1021/bi026283k · 2002 · External reference
The histone tails of the nucleosome
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Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions
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Structures and interactions of the core histone tail domains
10.1002/bip.10303 · 2003 · External reference
Characterization of the N-terminal tail domain of histone H3 in condensed nucleosome arrays by hydrogen exchange and NMR
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Intrinsic protein disorder, amino acid composition, and histone terminal domains
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An investigation of the conformational changes of histone F2b by high resolution nuclear magnetic resonance
10.1111/j.1432-1033.1970.tb01147.x · 1970 · External reference
An investigation of the conformational changes in histones F1 and F2a1 by proton magnetic resonance spectroscopy
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Absorption and circular dichroism studies on nucleohistone IV
10.1021/bi00789a027 · 1971 · External reference
Conformational changes in histone IV
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Salt effects on histone IV conformation
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Conformational changes of histone LAK (f2a2)
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Conformational changes of histone ARE(F3, III)
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A complex of histones IIb2 and IV
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More than just tails: intrinsic disorder in histone proteins
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Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing
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Mechanisms of transcriptional memory
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Programming off and on states in chromatin: mechanisms of Polycomb and trithorax group complexes
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Role of histone H2A ubiquitination in Polycomb silencing
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Stabilization of chromatin structure by PRC1, a Polycomb complex
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Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites
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Histone methyltransferase activity of a Drosophila Polycomb group repressor complex
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Structure of a Bmi-1-Ring1B polycomb group ubiquitin ligase complex
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Unresolved reference
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Nuclear trafficking in health and disease
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Traffic to the inner membrane of the nuclear envelope
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Mechanisms and dynamics of nuclear lamina-genome interactions
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The nuclear pore complex: bridging nuclear transport and gene regulation
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The structure of the nuclear pore complex
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Functional architecture of the nuclear pore complex
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The Saccharomyces cerevisiae nucleoporin Nup2p is a natively unfolded protein
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Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded
10.1073/pnas.0437902100 · 2003 · External reference
A bimodal distribution of two distinct categories of intrinsically disordered structures with separate functions in FG nucleoporins
10.1074/mcp.m000035-mcp201 · 2010 · External reference
Disordered proteinaceous machines
10.1021/cr4007329 · 2014 · External reference
Cajal bodies and coilin—moving towards function
10.1083/jcb.200206111 · 2002 · External reference
The Cajal body
10.1016/j.bbamcr.2008.07.016 · 2008 · External reference
Plant coilin: structural characteristics and RNA-binding properties
10.1371/journal.pone.0053571 · 2013 · External reference
A perinucleolar compartment contains several RNA polymerase III transcripts as well as the polypyrimidine tract-binding protein, hnRNP I
10.1083/jcb.129.5.1181 · 1995 · External reference
The dynamic organization of the perinucleolar compartment in the cell nucleus
10.1083/jcb.137.5.965 · 1997 · External reference
The perinucleolar compartment
10.1101/cshperspect.a000679 · 2010 · External reference
Structure and RNA interactions of the N-terminal RRM domains of PTB
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Structure of PTB bound to RNA: specific binding and implications for splicing regulation
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Crystallographic analysis of polypyrimidine tract-binding protein-Raver1 interactions involved in regulation of alternative splicing
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The nucleolus: structure/function relationship in RNA metabolism
10.1002/wrna.39 · 2010 · External reference
The multifunctional nucleolus
10.1038/nrm2184 · 2007 · External reference
Effects of macromolecular crowding on the intrinsically disordered proteins c-Fos and p27(Kip1)
10.1021/bm015502z · 2001 · External reference
p27 binds cyclin-CDK complexes through a sequential mechanism involving binding-induced protein folding
10.1038/nsmb746 · 2004 · External reference
Regulation of cell division by intrinsically unstructured proteins: intrinsic flexibility, modularity, and signaling conduits
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Signal transduction via unstructured protein conduits
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Dynamic optimization of signal transduction via intrinsic disorder
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Intrinsic protein flexibility in regulation of cell proliferation: advantages for signaling and opportunities for novel therapeutics
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Cell cycle regulation by the intrinsically disordered proteins p21 and p27
10.1042/bst20120092 · 2012 · External reference
Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex
10.1038/382325a0 · 1996 · External reference
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners
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Intrinsic protein disorder and protein-protein interactions
2012 · External reference
Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding
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Review: properties and assembly mechanisms of ND10, PML bodies, or PODs
10.1006/jsbi.2000.4239 · 2000 · External reference
Promyelocytic leukemia (PML) nuclear bodies are protein structures that do not accumulate RNA
10.1083/jcb.148.2.283 · 2000 · External reference
PML bodies associate specifically with the MHC gene cluster in interphase nuclei
10.1242/jcs.114.20.3705 · 2001 · External reference
PML nuclear bodies are highly organised DNA–protein structures with a function in heterochromatin remodelling at the G2 phase
10.1242/jcs.02965 · 2006 · External reference
Roles of BRCA1 and its interacting proteins
10.1002/1521-1878(200008)22:8<728::aid-bies6>3.0.co;2-b · 2000 · External reference
Characterization of segments from the central region of BRCA1: an intrinsically disordered scaffold for multiple protein–protein and protein–DNA interactions?
10.1016/j.jmb.2004.10.045 · 2005 · External reference
Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms
10.1073/pnas.0507916103 · 2006 · External reference
Intrinsic disorder-based protein interactions and their modulators
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Recent highlights of RNA-polymerase-II-mediated transcription
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Eukaryotic transcriptional control
10.1016/s0962-8924(99)01679-7 · 1999 · External reference
RNA polymerase II holoenzymes and subcomplexes
10.1074/jbc.273.43.27757 · 1998 · External reference
Functional substitution of an essential yeast RNA polymerase subunit by a highly conserved mammalian counterpart
10.1128/mcb.14.6.4155 · 1994 · External reference
Six human RNA polymerase subunits functionally substitute for their yeast counterparts
10.1128/mcb.15.12.6895 · 1995 · External reference
Human RNA polymerase II subunit hsRPB7 functions in yeast and influences stress survival and cell morphology
10.1091/mbc.6.7.759 · 1995 · External reference
Four subunits that are shared by the three classes of RNA polymerase are functionally interchangeable between Homo sapiens and Saccharomyces cerevisiae
10.1128/mcb.15.9.4702 · 1995 · External reference
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
10.1016/s0092-8674(00)80711-4 · 1999 · External reference
The C-terminal domain of SRA1p has a fold more similar to PRP18 than to an RRM and does not directly bind to the SRA1 RNA STR7 region
10.1016/j.jmb.2014.01.007 · 2014 · External reference
Identification and characterization of a spinal muscular atrophy-determining gene
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Dynamic nature of cleavage bodies and their spatial relationship to DDX1 bodies, Cajal bodies, and gems
10.1091/mbc.e05-08-0768 · 2006 · External reference
The SMN complex
10.1016/j.yexcr.2004.03.022 · 2004 · External reference
Essential role for the SMN complex in the specificity of snRNP assembly
10.1126/science.1074962 · 2002 · External reference
Sequence-specific interaction of U1 snRNA with the SMN complex
10.1093/emboj/21.5.1188 · 2002 · External reference
The survival of motor neurons (SMN) protein interacts with the snoRNP proteins fibrillarin and GAR1
10.1016/s0960-9822(01)00316-5 · 2001 · External reference
A functional interaction between the survival motor neuron complex and RNA polymerase II
10.1083/jcb.152.1.75 · 2001 · External reference
Solution structure of the core SMN-Gemin2 complex
10.1042/bj20120241 · 2012 · External reference
Structural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins
10.1038/nsmb.2185 · 2011 · External reference
The importance of intrinsic disorder for protein phosphorylation
10.1093/nar/gkh253 · 2004 · External reference
The structural and functional signatures of proteins that undergo multiple events of post-translational modification
10.1002/pro.2494 · 2014 · External reference
Intrinsically disordered proteins as crucial constituents of cellular aqueous two phase systems and coacervates
10.1016/j.febslet.2014.11.028 · 2015 · External reference
High mobility of proteins in the mammalian cell nucleus
10.1038/35007077 · 2000 · External reference
Protein mobility within the nucleus—what are the right moves?
10.1016/s0092-8674(01)00258-6 · 2001 · External reference
Germline P granules are liquid droplets that localize by controlled dissolution/condensation
10.1126/science.1172046 · 2009 · External reference
Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes
10.1073/pnas.1017150108 · 2011 · External reference
Phase transitions in the assembly of multivalent signalling proteins
10.1038/nature10879 · 2012 · External reference
Myelin membrane assembly is driven by a phase transition of myelin basic proteins into a cohesive protein meshwork
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A nuclear F-actin scaffold stabilizes ribonucleoprotein droplets against gravity in large cells
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Dual specificity kinase DYRK3 couples stress granule condensation/dissolution to mTORC1 signaling
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Phase transitions and size scaling of membrane-less organelles
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Aqueous phase separation as a possible route to compartmentalization of biological molecules
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The nucleus and sub-nuclear domains
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