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References from Organoid Intelligent Morphomics: Decoding the organoid morphome through artificial intelligence from phenotypic quantification to mechanistic insight. Local targets link to admitted publications; unresolved targets remain external evidence.
Organoids
10.1038/s43586-022-00174-y · 2022 · External reference
Organoids revealed: morphological analysis of the profound next generation in-vitro model with artificial intelligence
10.1007/s42242-022-00226-y · 2023 · External reference
Organoid assessment technologies
10.1002/ctm2.1499 · 2023 · External reference
Neuroblastoma invasion strategies are regulated by the extracellular matrix
10.3390/cancers13040736 · 2021 · External reference
Promises and challenges for the implementation of computational medical imaging (radiomics) in oncology
10.1093/annonc/mdx034 · 2017 · External reference
Mapping cell phenomics with multiparametric flow cytometry assays
10.1007/s43657-021-00031-0 · 2022 · External reference
From gross anatomy to the nanomorphome: stereological tools provide a paradigm for advancing research in quantitative morphomics
10.1111/joa.12287 · 2015 · External reference
Self-aligned myofibers in 3D bioprinted extracellular matrix-based construct accelerate skeletal muscle function restoration
10.1063/5.0039639 · 2021 · External reference
Artificial intelligence for high content imaging in drug discovery
10.1016/j.sbi.2024.102842 · 2024 · External reference
A highly efficient, scalable pipeline for fixed feature extraction from large-scale high-content imaging screens
10.1016/j.isci.2024.111434 · 2024 · External reference
Clinical applications of human organoids
10.1038/s41591-024-03489-3 · 2025 · External reference
hiPSC-Driven organoid construction and application prospects
2025 · External reference
Deep learning for AI
10.1145/3448250 · 2021 · External reference
What is machine learning, artificial neural networks and deep learning?-examples of practical applications in medicine
2023 · External reference
The role of artificial intelligence in shaping dentistry through advancement in data acquisition, clinical practice, education, and research
10.1016/j.dtrs.2025.100005 · 2026 · External reference
Development of a deep learning based image processing tool for enhanced organoid analysis
2023 · External reference
Deep learning models for digital image processing: a review
10.1007/s10462-023-10631-z · 2024 · External reference
Present application and perspectives of organoid imaging technology
2022 · External reference
High-definition DIC imaging uncovers transient stages of pathogen infection cycles on the surface of human adult stem cell-derived intestinal epithelium
2021 · External reference
Structural analysis of cerebral organoids using confocal microscopy and transmission/scanning electron microscopy
10.1093/mam/ozae119 · 2025 · External reference
High-resolution 3D imaging of fixed and cleared organoids
10.1038/s41596-019-0160-8 · 2019 · External reference
Longitudinal morphological and functional characterization of human heart organoids using optical coherence tomography
10.1016/j.bios.2022.114136 · 2022 · External reference
Label-free 3D photoacoustic imaging of tumor organoids for volumetric drug screening
2025 · External reference
Axially multifocal metalens for 3D volumetric photoacoustic imaging of neuromelanin in live brain organoid
10.1126/sciadv.adr0654 · 2025 · External reference
Label-free, high-resolution 3D imaging and machine learning analysis of intestinal organoids via low-coherence holotomography
10.3791/68529 · 2025 · External reference
Applications of multiphoton microscopy in imaging cerebral and retinal organoids
10.3389/fnins.2024.1360482 · 2024 · External reference
Light sheet fluorescence microscopy
10.1038/s43586-021-00069-4 · 2021 · External reference
Low-cost and scalable projected light-sheet microscopy for the high-resolution imaging of cleared tissue and living samples
10.1038/s41551-024-01249-9 · 2024 · External reference
Curved light sheet microscopy for centimetre-scale cleared tissue imaging
10.1038/s41566-025-01659-4 · 2025 · External reference
Multi-photon, label-free photoacoustic and optical imaging of NADH in brain cells
10.1038/s41377-025-01895-x · 2025 · External reference
Optical coherence photoacoustic microscopy for 3D cancer model imaging with AI-assisted organoid analysis
10.1038/s41377-025-02177-2 · 2026 · External reference
Protocol for quality control screening of brain organoid morphology
10.1016/j.xpro.2026.104423 · 2026 · External reference
OrganoID: a versatile deep learning platform for tracking and analysis of single-organoid dynamics
10.1371/journal.pcbi.1010584 · 2022 · External reference
Advanced 3D imaging and organoid bioprinting for biomedical research and therapeutic applications
10.1016/j.addr.2024.115237 · 2024 · External reference
Non-invasive label-free imaging analysis pipeline for in situ characterization of 3D brain organoids
10.1038/s41598-024-72038-2 · 2024 · External reference
Multiscale 3D phenotyping of human cerebral organoids
10.1038/s41598-020-78130-7 · 2020 · External reference
Deep learning-based 3D single-cell imaging analysis pipeline enables quantification of cell-cell interaction dynamics in the tumor microenvironment
10.1158/0008-5472.can-23-1100 · 2024 · External reference
Machine learning-assisted high-content imaging analysis of 3D MCF7 microtissues for estrogenic effect prediction
10.1038/s41598-024-53323-6 · 2024 · External reference
From pixels to insights: machine learning and deep learning for bioimage analysis
10.1002/bies.202300114 · 2024 · External reference
Automated brightfield morphometry of 3D organoid populations by OrganoSeg
10.1038/s41598-017-18815-8 · 2018 · External reference
Open-source tools for volume estimation of 3D multicellular aggregates
10.3390/app9081616 · 2019 · External reference
OrgaQuant: human intestinal organoid localization and quantification using deep convolutional neural networks
10.1038/s41598-019-48874-y · 2019 · External reference
3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images
2020 · External reference
deepOrganoid: a brightfield cell viability model for screening matrix-embedded organoids
10.1016/j.slasd.2022.03.004 · 2022 · External reference
Imaging-based machine learning analysis of patient-derived tumor organoid drug response
10.3389/fonc.2021.771173 · 2021 · External reference
CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia
2023 · External reference
VONet: a deep learning network for 3D reconstruction of organoid structures with a minimal number of confocal images
2024 · External reference
Digitalized organoids: integrated pipeline for high-speed 3D analysis of organoid structures using multilevel segmentation and cellular topology
10.1038/s41592-025-02685-4 · 2025 · External reference
Quantification of substrate and cellular strains in stretchable 3D cell cultures: an experimental and computational framework
10.1111/jmi.12520 · 2017 · External reference
Repurposing high-throughput image assays enables biological activity prediction for drug discovery
10.1016/j.chembiol.2018.01.015 · 2018 · External reference
A semi-automated algorithm for image analysis of respiratory organoids
10.1371/journal.pcbi.1013589 · 2025 · External reference
Neural network models and deep learning
10.1016/j.cub.2019.02.034 · 2019 · External reference
Rapid 3D phenotypic analysis of neurons and organoids using data-driven cell segmentation-free machine learning
10.1371/journal.pcbi.1008630 · 2021 · External reference
A new perspective on precision medicine: the power of digital organoids
10.34133/bmr.0171 · 2025 · External reference
Brain organoid data synthesis and evaluation
10.3389/fnins.2023.1220172 · 2023 · External reference
Generative frame interpolation enhances tracking of biological objects in time-lapse microscopy
2025 · External reference
Medical image segmentation review: the success of U-Net
10.1109/tpami.2024.3435571 · 2024 · External reference
Learning with limited annotations: a survey on deep semi-supervised learning for medical image segmentation
10.1016/j.compbiomed.2023.107840 · 2024 · External reference
Rapid and automated multidimensional fluorescence microscopy profiling of 3D human breast cultures
10.1039/c3ib20275e · 2013 · External reference
Bioengineered scaffolds for 3D analysis of glioblastoma proliferation and invasion
10.1007/s10439-014-1223-1 · 2015 · External reference
A high-throughput organoid microinjection platform to study gastrointestinal microbiota and luminal physiology
10.1016/j.jcmgh.2018.05.004 · 2018 · External reference
Development of deep learning “DTONet” for accurate detection of tumor organoids
10.1016/j.bspc.2026.109824 · 2026 · External reference
Orga-Dete: an improved lightweight deep learning model for lung organoid detection and classification
10.3390/app15158377 · 2025 · External reference
Deliod a lightweight detection model for intestinal organoids based on deep learning
10.1038/s41598-025-89409-y · 2025 · External reference
IDP-Head: an interactive dual-perception architecture for organoid detection in mouse microscopic images
2025 · External reference
Deep-Orga: an improved deep learning-based lightweight model for intestinal organoid detection
10.1016/j.compbiomed.2023.107847 · 2024 · External reference
An enhanced loss function simplifies the deep learning model for characterizing the 3D organoid models
2021 · External reference
Mu-Net a light architecture for small dataset segmentation of brain organoid bright-field images
10.3390/biomedicines11102687 · 2023 · External reference
Active mesh and neural network pipeline for cell aggregate segmentation
10.1016/j.bpj.2023.03.038 · 2023 · External reference
3D-Organoid-SwinNet: high-content profiling of 3D organoids
10.1109/jbhi.2024.3511422 · 2025 · External reference
Multi-Axis attention with convolution parallel block for organoid segmentation
10.1109/jas.2023.124026 · 2024 · External reference
A local–global unified scheme driven by positionable texture and multi-level boundary for lung cancer organoids segmentation
10.1016/j.eswa.2024.123888 · 2024 · External reference
Enhanced U-Net-Based deep learning model for automated segmentation of organoid images
2025 · External reference
Image segmentation of treated and untreated tumor spheroids by fully convolutional networks
10.1093/gigascience/giaf027 · 2025 · External reference
Fast learning-free organoid quantification and tracking with OrganoSeg2
10.1038/s41598-026-37526-7 · 2026 · External reference
OrganoLabeler: a quick and accurate annotation tool for organoid images
10.1021/acsomega.4c06450 · 2024 · External reference
In-silico and in-vitro morphometric analysis of intestinal organoids
10.1371/journal.pcbi.1011386 · 2023 · External reference
Organfit: a multi-scale convolutional model with ellipse fitting for organoid identification
10.1007/s40747-025-02177-0 · 2025 · External reference
Fuzzy mixture-of-experts aggregation for organoid identification with multiscale state space features
10.1109/tfuzz.2025.3622935 · 2026 · External reference
MOrgAna: accessible quantitative analysis of organoids with machine learning
10.1242/dev.199611 · 2021 · External reference
A convexity-preserving level-set method for the segmentation of tumor organoids
2024 · External reference
Reliable identification and quantification of neural cells in microscopic images of neurospheres
10.1002/cyto.a.24514 · 2022 · External reference
Cellpose as a reliable method for single-cell segmentation of autofluorescence microscopy images
10.1038/s41598-024-82639-6 · 2025 · External reference
Inner ear multiple primary cell type detection system
10.1038/s41597-025-04700-x · 2025 · External reference
OSCAR is an online ML-powered tool for organoid cell counting using bright-field images
2025 · External reference
OrgaSegment: deep-learning based organoid segmentation to quantify CFTR dependent fluid secretion
10.1038/s42003-024-05966-4 · 2024 · External reference
Quantitative imaging analysis of internal structural complexity in mouse heart organoids; comparison to mouse embryonic hearts
10.1111/gtc.70055 · 2025 · External reference
Deep learning based characterization of human organoids using optical coherence tomography
10.1364/boe.515781 · 2024 · External reference
A novel deep learning segmentation model for organoid-based drug screening
10.3389/fphar.2022.1080273 · 2022 · External reference
A deep learning model for drug screening and evaluation in bladder cancer organoids
2023 · External reference
Organalysis: multifunctional image preprocessing and analysis software for cardiac organoid studies
10.1089/ten.tec.2023.0150 · 2023 · External reference
High-throughput deconvolution of 3D organoid dynamics at cellular resolution for cancer pharmacology with Cellos
10.1038/s41467-023-44162-6 · 2023 · External reference
Organoid morphology-guided classification for oral cancer reveals prognosis
2025 · External reference
3D quantification of viral transduction efficiency in living human retinal organoids
10.1002/smtd.202401050 · 2026 · External reference
Application and comparison of supervised learning strategies to classify polarity of epithelial cell spheroids in 3D culture
10.3389/fgene.2020.00248 · 2020 · External reference
Understanding patient-derived tumor organoid growth through an integrated imaging and mathematical modeling framework
10.1371/journal.pcbi.1012256 · 2024 · External reference
OrganoIDNet: a deep learning tool for identification of therapeutic effects in PDAC organoid-PBMC co-cultures from time-resolved imaging data
10.1007/s13402-024-00958-2 · 2025 · External reference
Human organoids in basic research and clinical applications
10.1038/s41392-022-01024-9 · 2022 · External reference
Inverse-power-law behavior of cellular motility reveals stromal-epithelial cell interactions in 3D co-culture by OCT fluctuation spectroscopy
10.1364/optica.2.000877 · 2015 · External reference
Volumetric growth tracking of patient-derived cancer organoids using optical coherence tomography
10.1364/boe.428197 · 2021 · External reference
OrBITS: label-free and time-lapse monitoring of patient derived organoids for advanced drug screening
10.1007/s13402-022-00750-0 · 2023 · External reference
A knowledge-driven deep learning framework for organoid morphological segmentation and characterization
10.1186/s12915-025-02411-8 · 2025 · External reference
A deep learning model for detection and tracking in high-throughput images of organoid
10.1016/j.compbiomed.2021.104490 · 2021 · External reference
Segmentation and multi-timepoint tracking of 3D cancer organoids from optical coherence tomography images using deep neural networks
10.3390/diagnostics14121217 · 2024 · External reference
A biomimetic physical-biological coupled bone organoid 3D culture system for bone repair
2026 · External reference
Segmentation and tracking of mammary epithelial organoids in Brightfield microscopy
10.1109/tmi.2022.3210714 · 2023 · External reference
Multiscale light-sheet organoid imaging framework
10.1038/s41467-022-32465-z · 2022 · External reference
OrganoidTracker: efficient cell tracking using machine learning and manual error correction
10.1371/journal.pone.0240802 · 2020 · External reference
Lactate controls cancer stemness and plasticity through epigenetic regulation
10.1016/j.cmet.2025.01.002 · 2025 · External reference
CytoCensus, mapping cell identity and division in tissues and organs using machine learning
10.7554/elife.51085 · 2020 · External reference
Cell tracking with accurate error prediction
10.1038/s41592-025-02845-6 · 2025 · External reference
Analysis of organoid and immune cell co-cultures by machine learning-empowered image cytometry
2023 · External reference
Methods to label, image, and analyze the complex structural architectures of microvascular networks
10.1111/micc.12520 · 2019 · External reference
Machine learning-aided three-dimensional morphological quantification of angiogenic vasculature in the multiculture microfluidic platform
10.1007/s13206-023-00114-2 · 2023 · External reference
Evaluation of the morphological and biological functions of vascularized microphysiological systems with supervised machine learning
10.1007/s10439-023-03177-2 · 2023 · External reference
Label-free prediction of vascular connectivity in perfused microvascular networks in vitro
10.1016/j.cmpb.2025.108953 · 2025 · External reference
A deep learning-based computational pipeline predicts developmental outcome in retinal organoids
10.1371/journal.pbio.3003597 · 2026 · External reference
D-CryptO: deep learning-based analysis of colon organoid morphology from brightfield images
10.1039/d2lc00596d · 2022 · External reference
Deep learning-powered scalable cancer organ chip for cancer precision medicine
2026 · External reference
BMP signaling in the intestinal epithelium drives a critical feedback loop to restrain IL-13-driven tuft cell hyperplasia
10.1126/sciimmunol.abl6543 · 2022 · External reference
Multi-class segmentation and classification of intestinal organoids: YOLO stand-alone vs. hybrid machine learning pipelines
10.3390/app152111311 · 2025 · External reference
Deep-LUMEN assay - human lung epithelial spheroid classification from brightfield images using deep learning
10.1039/d0lc01010c · 2020 · External reference
CLORG: a contrastive learning-based framework for morphological representation and classification of organoids
10.1016/j.array.2025.100446 · 2025 · External reference
AI-enabled label free monitoring of TGFβ1-induced remodeling in iPSC-derived alveolar organoids
2026 · External reference
A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids
10.1016/j.cels.2023.08.002 · 2023 · External reference
Molecular distinctions of bronchoalveolar and alveolar organoids under differentiation conditions
2024 · External reference
Deep learning model for predicting airway organoid differentiation
10.1007/s13770-023-00563-8 · 2023 · External reference
Deep learning predicts the differentiation of kidney organoids derived from human induced pluripotent stem cells
10.23876/j.krcp.22.017 · 2023 · External reference
Ins-ATP: deep estimation of ATP for organoid based on high throughput microscope images
10.1016/j.ymeth.2025.01.012 · 2025 · External reference
A deep-learning model for characterizing tumor heterogeneity using patient-derived organoids
10.1038/s41598-024-73725-w · 2024 · External reference
Machine learning-based estimation of spatial gene expression pattern during ESC-derived retinal organoid development
10.1038/s41598-023-49758-y · 2023 · External reference
Image-based profiling and deep learning reveal morphological heterogeneity of colorectal cancer organoids
10.1016/j.compbiomed.2024.108322 · 2024 · External reference
Artificial intelligence-assisted high-throughput screening of printing conditions of Hydrogel architectures for accelerated diabetic wound healing
2022 · External reference
Guidelines for manufacturing and application of organoids: liver
10.15283/ijsc24044 · 2024 · External reference
Quantifying the drug response of patient-derived organoid clusters by aggregated morphological indicators with multi-parameters based on optical coherence tomography
10.1364/boe.486666 · 2023 · External reference
HCS-3DX, a next-generation AI-driven automated 3D-oid high-content screening system
10.1038/s41467-025-63955-5 · 2025 · External reference
Versatile image-assisted cell sorting by selective trapping with spatiotemporal multiparameter targeting
10.1021/acssensors.5c01433 · 2025 · External reference
DOSS: microfluidic engineered system enables automated intelligent sorting and chemo-evaluation of droplet-based colorectal adenocarcinoma organoids
2025 · External reference
An AI-based segmentation and analysis pipeline for high-field MR monitoring of cerebral organoids
10.1038/s41598-023-48343-7 · 2023 · External reference
Lightweight deep learning model for classification of normal and abnormal vasculature in organoid images
10.3390/s26010112 · 2025 · External reference
A deep learning approach to predict differentiation outcomes in hypothalamic-pituitary organoids
10.1038/s42003-024-07109-1 · 2024 · External reference
Prediction of the hypothalamus-pituitary organoid formation using machine learning
2025 · External reference
Convolutional neural networks can predict retinal differentiation in retinal organoids
10.3389/fncel.2020.00171 · 2020 · External reference
One-time optimization of advanced T cell culture media using a machine learning pipeline
10.3389/fbioe.2021.614324 · 2021 · External reference
Connectomics of bone to brain-probing physical renderings of cellular experience
2021 · External reference
Bioluminescence assay for cell viability
10.1134/s0006297915060061 · 2015 · External reference
A quick and reliable image-based AI algorithm for evaluating cellular senescence of gastric organoids
2023 · External reference
OrganoidViT: a vision transformer-based deep learning model for segmenting viable and nonviable organoids in bright-field images
2026 · External reference
Quantitative viability analysis of 3D tissue cultures using machine learning image segmentation
10.1063/5.0189222 · 2024 · External reference
Implementing machine learning algorithms on finite element analyses data sets for selecting proper cellular structure
10.1142/s1758825121500721 · 2021 · External reference
Non-invasive quality control of organoid cultures using mesofluidic CSTR bioreactors and high-content imaging
10.1002/admt.202400473 · 2025 · External reference
mTIPs: multimodal time-series imaging and prediction system for early differentiation of retinal organoids
2026 · External reference
Development and validation of deep learning for predicting the growth of ovarian cancer organoids
10.1097/cm9.0000000000003575 · 2026 · External reference
Integration of human inspection and artificial intelligence-based morphological typing of patient-derived organoids reveals interpatient heterogeneity of colorectal cancer
10.1111/cas.15396 · 2022 · External reference
Advancing preclinical drug evaluation through automated 3D imaging for high-throughput screening with kidney organoids
10.1088/1758-5090/ad38df · 2024 · External reference
Precision organoid segmentation technique (POST): accurate organoid segmentation in challenging bright-field images
10.1631/bdm.2500119 · 2026 · External reference
Deep-learning analysis of micropattern-based organoids enables high-throughput drug screening of Huntington's disease models
2022 · External reference
Development of an AI model for DILI-level prediction using liver organoid brightfield images
10.1038/s42003-025-08205-6 · 2025 · External reference
High-throughput "read-on-ski" automated imaging and label-free detection system for toxicity screening of compounds using personalised human kidney organoids
10.1631/jzus.b2100701 · 2022 · External reference
Machine learning-assisted neurotoxicity prediction in human midbrain organoids
10.1016/j.parkreldis.2020.05.011 · 2020 · External reference
Variability vs. phenotype: multimodal analysis of Dravet syndrome brain organoids powered by deep learning
10.1016/j.isci.2025.113831 · 2025 · External reference
Single-organoid analysis reveals clinically relevant treatment-resistant and invasive subclones in pancreatic cancer
2023 · External reference
Drug screening at single-organoid resolution via bioprinting and interferometry
10.1038/s41467-023-38832-8 · 2023 · External reference
Phenotypic screening in cancer drug discovery - past, present and future
10.1038/nrd4366 · 2014 · External reference
Organoids: from bench to bedside applications
10.1002/mco2.70768 · 2026 · External reference
Iteration of tumor organoids in drug development: simplification and integration
2025 · External reference
Individual brain organoids reproducibly form cell diversity of the human cerebral cortex
10.1038/s41586-019-1289-x · 2019 · External reference
Tissue morphology influences the temporal program of human brain organoid development
10.1016/j.stem.2023.09.003 · 2023 · External reference
iPSC-derived and Patient-derived organoids: applications and challenges in scalability and reproducibility as pre-clinical models
10.1016/j.crtox.2024.100197 · 2024 · External reference
Standardization of organoid culture in cancer research
10.1002/cam4.5943 · 2023 · External reference
Sources of variation in multicenter rectal MRI data and their effect on radiomics feature reproducibility
10.1007/s00330-021-08251-8 · 2022 · External reference
Strategies to control cellular spatial organization in microphysiological systems
10.1038/s41378-025-01141-9 · 2026 · External reference
Dynamic hydrogel mechanics in organoid engineering: from matrix design to translational paradigms
2026 · External reference
Cell-extracellular matrix mechanotransduction in 3D
10.1038/s41580-023-00583-1 · 2023 · External reference
Spatially defined microenvironment for engineering organoids
10.1063/5.0198848 · 2024 · External reference
Clinical trial design and regulatory requirements for artificial intelligence as a medical device: a PRISMA-ScR-Guided scoping review of global guidance and evidence (2017-2025)
10.3390/jcm15051937 · 2026 · External reference
Integrating new approach methodologies (NAMs) into preclinical regulatory evaluation of oncology drugs
10.3390/biomimetics10120796 · 2025 · External reference
Promises and challenges of organoid-guided precision medicine
10.1016/j.medj.2021.08.005 · 2021 · External reference
Estimating the re-identification risk of clinical data sets
10.1186/1472-6947-12-66 · 2012 · External reference
Ethical challenges and governance strategies for microphysiological systems technology
10.3390/biology15131092 · 2026 · External reference
Organoids: a systematic review of ethical issues
10.1186/s13287-022-02950-9 · 2022 · External reference
AI and omics technologies in biobanking: applications and challenges for public health
10.1016/j.puhe.2025.105726 · 2025 · External reference
FAIR high content screening in bioimaging
10.1038/s41597-023-02367-w · 2023 · External reference
AI-enabled organoids: construction, analysis, and application
2024 · External reference
Standard metadata for 3D microscopy
10.1038/s41597-022-01562-5 · 2022 · External reference
Building a framework for reproducibility: the case for standardized data reporting and metadata integration in zebrafish research
10.1242/dmm.052441 · 2025 · External reference
Addressing standardization and semantics in an electronic lab notebook for multidisciplinary use: labimotion
10.1186/s13321-025-01021-4 · 2025 · External reference
Biomedical data repository concepts and management principles
10.1038/s41597-024-03449-z · 2024 · External reference
Developing a standardized but extendable framework to increase the findability of infectious disease datasets
10.1038/s41597-023-01968-9 · 2023 · External reference
Shaping pre-trained language models for task-specific embedding generation via consistency calibration
10.1016/j.neunet.2025.107754 · 2025 · External reference
Artificial intelligence foundation and pre-trained models: fundamentals, applications, opportunities, and social impacts
10.1016/j.simpat.2023.102754 · 2023 · External reference
OrgLine: a versatile pipeline for organoid morphometry using detector-guided prompts
10.1016/j.crmeth.2026.101482 · 2026 · External reference
Benchmarking pathology foundation models: adaptation strategies and scenarios
10.1016/j.compbiomed.2025.110031 · 2025 · External reference
From modality-specific to compositional foundation models for cell biology
2026 · External reference
10.1016/j.csbj.2024.08.005 · 2024 · Admitted local publication
Explainable artificial intelligence (XAI) in deep learning-based medical image analysis
10.1016/j.media.2022.102470 · 2022 · External reference
Biologically-informed neural networks guide mechanistic modeling from sparse experimental data
10.1371/journal.pcbi.1008462 · 2020 · External reference
Using physics-informed neural networks for modeling biological and epidemiological dynamical systems
10.3390/math13101664 · 2025 · External reference
Visible neural networks for multi-omics integration: a critical review
10.3389/frai.2025.1595291 · 2025 · External reference
Mechanochemical regulation of organoid morphogenesis: integrated signaling circuits in engineered microenvironments
2026 · External reference
Artificial Intelligence tool for prediction of ECM mimics hydrogel formulations via click chemistry
10.1016/j.bioadv.2025.214323 · 2025 · External reference
Spatial mapping of tissue properties in vivo reveals a 3D stiffness gradient in the mouse limb bud
10.1073/pnas.1912656117 · 2020 · External reference
Engineered materials for organoid systems
10.1038/s41578-019-0129-9 · 2019 · External reference
Engineered matrices enable the culture of human patient-derived intestinal organoids
2021 · External reference
Organ-on-a-Chip: a roadmap for translational research in human and veterinary medicine
10.3390/ijms262110753 · 2025 · External reference
A guide to the organ-on-a-chip
10.1038/s43586-022-00118-6 · 2022 · External reference
Leveraging the model-experiment loop: examples from cellular slime mold chemotaxis
10.1016/j.yexcr.2022.113218 · 2022 · External reference
In silico biological discovery with large perturbation models
10.1038/s43588-025-00870-1 · 2025 · External reference
Unresolved reference
2023 · External reference
Monitoring strategies for continuous evaluation of deployed clinical prediction models
10.1016/j.jbi.2025.104854 · 2025 · External reference
Beyond model development in healthcare AI: post-development robustness, post-deployment monitoring, and lifecycle Governance-A scoping review of reviews
2026 · External reference
Advancing AI for multi-omics and clinical data integration in basic and translational cancer research
10.1038/s41568-026-00922-2 · 2026 · External reference
Data governance & quality management—Innovation and breakthroughs across different fields
10.1016/j.jik.2024.100598 · 2024 · External reference
Artificial intelligence virtual organoids (AIVOs)
2026 · External reference
AI-organoid integrated systems for biomedical studies and applications
10.1002/btm2.10641 · 2024 · External reference
Vertex models: from cell mechanics to tissue morphogenesis
10.1098/rstb.2015.0520 · 2017 · External reference
From energy to cellular forces in the Cellular potts model: an algorithmic approach
10.1371/journal.pcbi.1007459 · 2019 · External reference
PDE-based control synthesis for a planar cable-driven continuum arm
10.1016/j.automatica.2024.111600 · 2024 · External reference
Cell-Based computational models of organoids: a systematic review
10.3390/cells15020177 · 2026 · External reference
10.1016/j.tibtech.2026.01.009
10.1016/j.tibtech.2026.01.009 · External reference
