Research graph
References from Characterization of MdDOX-Co homologs revealed a novel gibberellin metabolic clade and a single-residue switch dictating the catalytic site. Local targets link to admitted publications; unresolved targets remain external evidence.
Gibberellin metabolism and its regulation
10.1146/annurev.arplant.59.032607.092804 · 2008 · External reference
GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin
10.1038/nature04028 · 2005 · External reference
Identification and characterization of Arabidopsis gibberellin receptors
10.1111/j.1365-313x.2006.02748.x · 2006 · External reference
Evolution and diversity of the 2–oxoglutarate-dependent dioxygenase superfamily in plants
10.1111/tpj.12479 · 2014 · External reference
The apple gene responsible for columnar tree shape reduces the abundance of biologically active gibberellin
10.1111/tpj.15084 · 2021 · External reference
Molecular cloning of hyoscyamine 6 beta-hydroxylase, a 2-oxoglutarate-dependent dioxygenase, from cultured roots of Hyoscyamus niger
10.1016/s0021-9258(18)92843-7 · 1991 · External reference
A dioxygenase catalyzes steroid 16α-hydroxylation in steroidal glycoalkaloid biosynthesis
10.1104/pp.17.00501 · 2017 · External reference
Two dioxygenase genes, Ids3 and Ids2, from Hordeum vulgare are involved in the biosynthesis of mugineic acid family phytosiderophores
10.1023/a:1006491521586 · 2000 · External reference
In vivo evidence that Ids3 from Hordeum vulgare encodes a dioxygenase that converts 2′-deoxymugineic acid to mugineic acid in transgenic rice
10.1007/s004250000453 · 2001 · External reference
MEGA 12.1: Cross-platform release for macOS and Linux operating systems
10.1007/s00239-025-10287-z · 2026 · External reference
An improved general amino acid replacement matrix
10.1093/molbev/msn067 · 2008 · External reference
Accurate structure prediction of biomolecular interactions with AlphaFold 3
10.1038/s41586-024-07487-w · 2024 · External reference
AutoDock Vina 1.2.0: New docking methods, expanded force field, and python bindings
10.1021/acs.jcim.1c00203 · 2021 · External reference
Molecular docking using Chimera and autodock vina software for nonbioinformaticians
10.2196/14232 · 2020 · External reference
Unresolved reference
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A new mixing of Hartree-Fock and local density‐functional theories
10.1063/1.464304 · 1993 · External reference
Density‐functional thermochemistry. III. The role of exact exchange
10.1063/1.464913 · 1993 · External reference
Density-functional exchange-energy approximation with correct asymptotic behavior
10.1103/physreva.38.3098 · 1988 · External reference
Ab initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields
10.1021/j100096a001 · 1994 · External reference
Automatic atom type and bond type perception in molecular mechanical calculations
10.1016/j.jmgm.2005.12.005 · 2006 · External reference
Unresolved reference
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A fast and high-quality charge model for the next generation general AMBER force field
10.1063/5.0019056 · 2020 · External reference
Comparison of simple potential functions for simulating liquid water
10.1063/1.445869 · 1983 · External reference
The Amber biomolecular simulation programs
10.1002/jcc.20290 · 2005 · External reference
ff14SB: Improving the accuracy of protein side chain and backbone parameters from ff99SB
10.1021/acs.jctc.5b00255 · 2015 · External reference
A smooth particle mesh Ewald method
10.1063/1.470117 · 1995 · External reference
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
10.1016/0021-9991(77)90098-5 · 1977 · External reference
Routine microsecond Molecular Dynamics simulations with AMBER on GPUs. 2. Explicit solvent particle mesh Ewald
10.1021/ct400314y · 2013 · External reference
PTRAJ and CPPTRAJ: Software for processing and analysis of Molecular Dynamics trajectory data
10.1021/ct400341p · 2013 · External reference
Structure and mechanism of anthocyanidin synthase from Arabidopsis thaliana
10.1016/s0969-2126(01)00695-5 · 2002 · External reference
Chemical screening of inhibitors specific for MdDOX-Co that cause an apple columnar tree-shape
10.1093/bbb/zbad142 · 2023 · External reference
