Research graph
References from Marinobacter atlanticus electrode biofilms differentially regulate gene expression depending on electrode potential and lifestyle. Local targets link to admitted publications; unresolved targets remain external evidence.
Genomic potential of Marinobacter aquaeolei, a biogeochemical “opportunitroph”
10.1128/aem.01866-10 · 2011 · External reference
Microbial community diversity in seafloor basalt from the Arctic spreading ridges
10.1016/j.femsec.2004.06.014 · 2004 · External reference
Role of microbial populations in the release of reduced iron to the water column from marine aggregates
10.3354/ame01278 · 2009 · External reference
Functional diversity of bacteria in a ferruginous hydrothermal sediment
10.1038/ismej.2010.38 · 2010 · External reference
Marinobacter subterrani, a genetically tractable neutrophilic Fe(II)-oxidizing strain isolated from the Soudan Iron Mine
10.3389/fmicb.2015.00719 · 2015 · External reference
Complete genome sequence of Marinobacter sp. CP1, isolated from a self-regenerating biocathode biofilm
10.1128/genomea.01103-15 · 2015 · External reference
Arsenite oxidation using biogenic manganese oxides produced by a deep-sea manganese-oxidizing bacterium, Marinobacter sp. MnI7-9
10.1080/01490451.2011.654379 · 2013 · External reference
Marinobacter santoriniensis sp. nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment
10.1099/ijs.0.003145-0 · 2009 · External reference
Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by Marinobacter species
10.3389/fmicb.2013.00136 · 2013 · External reference
Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism
2014 · External reference
A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode
10.1128/aem.02947-14 · 2015 · External reference
Oxygen-reducing biocathodes designed with pure cultures of microbial strains isolated from seawater biofilms
10.1016/j.ibiod.2015.03.028 · 2015 · External reference
Marine aerobic biofilm as biocathode catalyst
10.1016/j.bioelechem.2009.06.006 · 2010 · External reference
Halotolerant bioanodes: the applied potential modulates the electrochemical characteristics, the biofilm structure and the ratio of the two dominant genera
10.1016/j.bioelechem.2016.06.006 · 2016 · External reference
Electrochemical characterization of Marinobacter atlanticus strain CP1 suggests a role for trace minerals in electrogenic activity
10.3389/fenrg.2019.00060 · 2019 · External reference
Development of a genetic system for Marinobacter atlanticus CP1 (sp. nov.), a wax ester producing strain isolated from an autotrophic biocathode
10.3389/fmicb.2018.03176 · 2018 · External reference
Weak electricigens: a new avenue for bioelectrochemical research
10.1016/j.biortech.2018.02.073 · 2018 · External reference
Application of cyclic voltammetry to investigate enhanced catalytic current generation by biofilm-modified anodes of Geobacter sulfurreducens strain DL1 vs. variant strain KN400
10.1039/c0ee00260g · 2011 · External reference
Metatranscriptomics supports the mechanism for biocathode electroautotrophy by “Candidatus Tenderia electrophaga”
2017 · External reference
Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment
10.1093/bioinformatics/btv425 · 2015 · External reference
Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli
10.1128/jb.183.24.7173-7181.2001 · 2001 · External reference
Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone
10.1021/bi201763d · 2012 · External reference
Rubredoxin:oxygen oxidoreductase enhances survival of Desulfovibrio vulgaris Hildenborough under microaerophilic conditions
10.1128/jb.00425-06 · 2006 · External reference
Gene set analysis: challenges, opportunities, and future research
10.3389/fgene.2020.00654 · 2020 · External reference
KEGG for integration and interpretation of large-scale molecular data sets
10.1093/nar/gkr988 · 2012 · External reference
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
10.1093/nar/gkz310 · 2019 · External reference
WGCNA: an R package for weighted correlation network analysis
10.1186/1471-2105-9-559 · 2008 · External reference
GAGE: generally applicable gene set enrichment for pathway analysis
10.1186/1471-2105-10-161 · 2009 · External reference
The bacterial LexA transcriptional repressor
10.1007/s00018-008-8378-6 · 2009 · External reference
Mutant phenotypes for thousands of bacterial genes of unknown function
10.1038/s41586-018-0124-0 · 2018 · External reference
The ArsR protein is a trans-acting regulatory protein
10.1111/j.1365-2958.1991.tb00779.x · 1991 · External reference
A complex regulatory network controls aerobic ethanol oxidation in Pseudomonas aeruginosa: indication of four levels of sensor kinases and response regulators
10.1099/mic.0.032847-0 · 2010 · External reference
The biofilm-specific antibiotic resistance gene ndvB is important for expression of ethanol oxidation genes in Pseudomonas aeruginosa biofilms
10.1128/jb.06178-11 · 2012 · External reference
Effects of Fis on Escherichia coli gene expression during different growth stages
10.1099/mic.0.2007/008565-0 · 2007 · External reference
GGDEF and EAL domains inversely regulate cyclic di‐GMP levels and transition from sessility to motility
10.1111/j.1365-2958.2004.04206.x · 2004 · External reference
Transcriptional responses to ppGpp and DksA
10.1146/annurev-micro-090817-062444 · 2018 · External reference
The dksA promoter is negatively feedback regulated by DksA and ppGpp
10.1111/j.1365-2958.2011.07649.x · 2011 · External reference
Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic
10.1186/1741-7007-4-29 · 2006 · External reference
Bacterial RNase P: a new view of an ancient enzyme
10.1038/nrmicro1491 · 2006 · External reference
Bacterial retrons function in anti-phage defense
10.1016/j.cell.2020.09.065 · 2020 · External reference
Quorum sensing controls the Pseudomonas aeruginosa CRISPR-Cas adaptive immune system
10.1073/pnas.1617415113 · 2017 · External reference
Highly selective tungstate transporter protein TupA from Desulfovibrio alaskensis G20
10.1038/s41598-017-06133-y · 2017 · External reference
Amino acid properties and consequences of substitutions
2003 · External reference
The ribonucleotide reductase family—genetics and genomics
2008 · External reference
Oxidative stress responses in Escherichia coli and Salmonella typhimurium
10.1128/mr.55.4.561-585.1991 · 1991 · External reference
The bacterial type VI secretion machine: yet another player for protein transport across membranes
10.1099/mic.0.2008/016840-0 · 2008 · External reference
The VgrG proteins are "a la carte" delivery systems for bacterial type VI effectors
10.1074/jbc.m114.563429 · 2014 · External reference
A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress
10.1186/1752-0509-4-122 · 2010 · External reference
Bacterial sulfite-oxidizing enzymes
10.1016/j.bbabio.2010.09.004 · 2011 · External reference
Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation
10.1073/pnas.1500203112 · 2015 · External reference
Manganese scavenging and oxidative stress response mediated by type VI secretion system in Burkholderia thailandensis
10.1073/pnas.1614902114 · 2017 · External reference
A Pseudomonas T6SS effector recruits PQS-containing outer membrane vesicles for iron acquisition
10.1038/ncomms14888 · 2017 · External reference
The Pseudomonas aeruginosa sensor RetS switches Type III and Type VI secretion via c‐di‐GMP signalling
10.1111/j.1462-2920.2011.02595.x · 2011 · External reference
Proteomic analysis of Marinobacter hydrocarbonoclasticus SP17 biofilm formation at the alkane-water interface reveals novel proteins and cellular processes involved in hexadecane assimilation
10.1016/j.resmic.2009.09.010 · 2009 · External reference
Identification of an extracellular polysaccharide network essential for cytochrome anchoring and biofilm formation in Geobacter sulfurreducens
10.1128/jb.01092-10 · 2011 · External reference
Both widespread PEP-CTERM proteins and exopolysaccharides are required for floc formation of Zoogloea resiniphila and other activated sludge bacteria
10.1111/1462-2920.14080 · 2018 · External reference
Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification
10.1128/jb.06026-11 · 2012 · External reference
Engineered living conductive biofilms as functional materials
2019 · External reference
A missing link between complex I and group 4 membrane-bound [NiFe] hydrogenases
10.1016/j.bbabio.2012.09.012 · 2013 · External reference
Extraction and purification of total RNA from Streptococcus mutans biofilms
10.1016/j.ab.2007.03.021 · 2007 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Removing technical variability in RNA-seq data using conditional quantile normalization
10.1093/biostatistics/kxr054 · 2012 · External reference
Controlling the false discovery rate: a practical and powerful approach to multiple testing
10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference
Unresolved reference
2017 · External reference
RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria
10.1186/1471-2164-14-745 · 2013 · External reference
The MEME suite
10.1093/nar/gkv416 · 2015 · External reference
Unresolved reference
2009 · External reference
