Research graph
References from Intra-colony channel morphology in Escherichia coli biofilms is governed by nutrient availability and substrate stiffness. Local targets link to admitted publications; unresolved targets remain external evidence.
Biofilms: microbial life on surfaces
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Medical biofilms
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Stiffness of cross-linked poly (dimethylsiloxane) affects bacterial adhesion and antibiotic susceptibility of attached cells
10.1021/la502029f · 2014 · External reference
Fewer bacteria adhere to softer hydrogels
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How bacteria respond to material stiffness during attachment: a role of escherichia coli flagellar motility
10.1021/acsami.7b04757 · 2017 · External reference
Influence of polyelectrolyte film stiffness on bacterial growth
10.1021/bm301774a · 2013 · External reference
The role of mechanical forces in the planar-to-bulk transition in growing escherichia coli microcolonies
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Growth of e. coli bl21 in minimal media with different gluconeogenic carbon sources and salt contents
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Effect of nutrient concentration on the growth of escherichia coli
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The growth of micro-organisms in relation to their energy supply
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Mechanical interactions between bacteria and hydrogels
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Diffusion-limited aggregation
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Bacterial fractal growth in the concentration field of nutrient
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Combined effect of substrate concentration and flow velocity on effective diffusivity in biofilms
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Spatial alanine metabolism determines local growth dynamics of escherichia coli colonies
10.7554/elife.70794 · 2021 · External reference
Metabolism in dense microbial colonies: 13c metabolic flux analysis of e. coli grown on agar identifies two distinct cell populations with acetate cross-feeding
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Nutritional stress induces exchange of cell material and energetic coupling between bacterial species
10.1038/ncomms7283 · 2015 · External reference
Channel structures in aerobic biofilms of fixed-film reactors treating contaminated groundwater
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Spatial organization of microbial biofilm communities
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Single particle tracking reveals spatial and dynamic organization of the escherichia coli biofilm matrix
10.1088/1367-2630/16/8/085014 · 2014 · External reference
Intra-colony channels in e. coli function as a nutrient uptake system
10.1038/s41396-020-0700-9 · 2020 · External reference
A novel optical microscope for imaging large embryos and tissue volumes with sub-cellular resolution throughout
10.7554/elife.18659 · 2016 · External reference
Impact of carbon and nitrogen conditions on e. coli surface thermodynamics
10.1016/s0927-7765(02)00143-1 · 2003 · External reference
Spatiotemporal establishment of dense bacterial colonies growing on hard agar
10.7554/elife.41093 · 2019 · External reference
The growth and form of bacterial colonies
1979 · External reference
Topography and expansion patterns at the biofilm-agar interface in bacillus subtilis biofilms
10.3390/microorganisms9010084 · 2021 · External reference
Mechanical instability and interfacial energy drive biofilm morphogenesis
10.7554/elife.43920 · 2019 · External reference
Mechanical forces drive a reorientation cascade leading to biofilm self-patterning
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Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy
10.1126/science.abb8501 · 2020 · External reference
Bacterial multicellularity: the biology of escherichia coli building large-scale biofilm communities
10.1146/annurev-micro-031921-055801 · 2021 · External reference
Regulation of cell size in response to nutrient availability by fatty acid biosynthesis in escherichia coli
10.1073/pnas.1209742109 · 2012 · External reference
Unresolved reference
2004 · External reference
Unresolved reference
2000 · External reference
Biofilm growth has a threshold response to glucose in vitro
10.1007/s11999-014-3538-5 · 2014 · External reference
A kinetic study of the mode of growth of surface colonies of bacteria and fungi
1967 · External reference
Two-dimensionality of yeast colony expansion accompanied by pattern formation
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The spatial and metabolic basis of colony size variation
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Influence of physical effects on the swarming motility of pseudomonas aeruginosa
10.1016/j.bpj.2017.02.019 · 2017 · External reference
Timing the start of division in e. coli: a single-cell study
10.1088/1478-3975/5/4/046001 · 2008 · External reference
Individual-based modelling of biofilms
10.1099/00221287-147-11-2897 · 2001 · External reference
Three-dimensional biofilm model with individual cells and continuum eps matrix
10.1002/bit.20917 · 2006 · External reference
idynomics: next-generation individual-based modelling of biofilms
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A framework for multidimensional modelling of activity and structure of multispecies biofilms
10.1111/j.1462-2920.2005.00787.x · 2005 · External reference
Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging
10.1073/pnas.1611494113 · 2016 · External reference
Emergence of threedimensional order and structure in growing biofilms
10.1038/s41567-018-0356-9 · 2019 · External reference
Architectural transitions in vibrio cholerae biofilms at single-cell resolution
10.1073/pnas.1601702113 · 2016 · External reference
Mini-tn7 transposons for site-specific tagging of bacteria with fluorescent proteins
10.1111/j.1462-2920.2004.00605.x · 2004 · External reference
Recipes and tools for culture of escherichia coli
10.1002/cpmb.83 · 2019 · External reference
Fast optical sectioning for widefield fluorescence mesoscopy with the mesolens based on hilo microscopy
10.1038/s41598-018-34516-2 · 2018 · External reference
Fiji: an open-source platform for biological-image analysis
10.1038/nmeth.2019 · 2012 · External reference
Unresolved reference
External reference
Unresolved reference
1993 · External reference
