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References from Identification of genetic determinants that promote biofilm growth under heterotrophic conditions in Cupriavidus necator using transposon enrichment. Local targets link to admitted publications; unresolved targets remain external evidence.
Cupriavidus necator as a platform for polyhydroxyalkanoate production: an overview of strains, metabolism, and modeling approaches
10.1016/j.biotechadv.2023.108264 · 2023 · External reference
Physiology-informed use of Cupriavidus necator in biomanufacturing: a review of advances and challenges
10.1186/s12934-025-02643-x · 2025 · External reference
Strain and model development for auto- and heterotrophic 2,3-butanediol production using Cupriavidus necator H16
10.1186/s13068-024-02549-7 · 2024 · External reference
Biofilms for production of chemicals and energy
10.1146/annurev-chembioeng-100522-110939 · 2024 · External reference
Biofilm vs. planktonic lifestyle: consequences for pesticide 2,4-D metabolism by Cupriavidus necator JMP134
10.3389/fmicb.2017.00904 · 2017 · External reference
The superficial life of microbes
10.1038/441300a · 2006 · External reference
Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms
10.1038/nrmicro3033 · 2013 · External reference
Genome-wide transposon mutagenesis reveals a role for pO157 genes in biofilm development in Escherichia coli O157:H7 EDL933
10.1128/iai.00156-10 · 2010 · External reference
Genome-wide mutagenesis of Xanthomonas axonopodis pv. citri reveals novel genetic determinants and regulation mechanisms of biofilm formation
2011 · External reference
Massively parallel transposon mutagenesis identifies temporally essential genes for biofilm formation in Escherichia coli
2021 · External reference
Isolation of transposon mutants and characterization of genes involved in biofilm formation by Pseudomonas fluorescens TC222
10.1007/s00203-007-0235-8 · 2007 · External reference
Transposon insertion sequencing analysis unveils novel genes involved in luxR expression and quorum sensing regulation in Vibrio alginolyticus
10.1016/j.micres.2022.127243 · 2023 · External reference
A defined transposon mutant library and its use in identifying motility genes in Vibrio cholerae
10.1073/pnas.0803281105 · 2008 · External reference
The design and analysis of transposon insertion sequencing experiments
10.1038/nrmicro.2015.7 · 2016 · External reference
BosR: a novel biofilm-specific regulator in Pseudomonas aeruginosa
10.3389/fmicb.2022.1021021 · 2022 · External reference
SinR is a mutational target for fine-tuning biofilm formation in laboratory-evolved strains of Bacillus subtilis
10.1186/s12866-014-0301-8 · 2014 · External reference
Formation and utilization of Poly-β-Hydroxybutyric acid by knallgas bacteria (hydrogenomonas)
10.1038/191463a0 · 1961 · External reference
Untersuchungen über Wachstum und Speicherstoffsynthese von Hydrogenomonas
10.1007/bf00406429 · 1962 · External reference
New transposon tools tailored for metabolic engineering of Gram-negative microbial cell factories
2014 · External reference
Restriction-site-based enrichment coupled to adaptive sampling enables long-read transposon-insertion sequencing
2026 · External reference
T-DNA as an insertional mutagen in arabidopsis
10.1105/tpc.11.12.2283 · 1999 · External reference
A colony bank containing synthetic Col E1 hybrid plasmids representative of the entire E. coli genome
10.1016/0092-8674(76)90055-6 · 1976 · External reference
Machine-assisted cultivation and analysis of biofilms
10.1038/s41598-019-45414-6 · 2019 · External reference
Elucidating the development of cooperative anode-biofilm-structures
10.1016/j.bioflm.2024.100193 · 2024 · External reference
Efficient biochemical production of acetoin from carbon dioxide using Cupriavidus necator H16
10.1186/s13068-019-1512-x · 2019 · External reference
New yeast recombineering tools for bacteria
10.1016/j.plasmid.2009.05.002 · 2009 · External reference
Investigation of the mesoscale structure and volumetric features of biofilms using optical coherence tomography
10.1002/bit.22864 · 2010 · External reference
Enrichment of phosphate-accumulating organisms (PAOs) in a microfluidic model biofilm system by mimicking a typical aerobic granular sludge feast/famine regime
10.1007/s00253-022-11759-8 · 2022 · External reference
Fiji: an open-source platform for biological-image analysis
10.1038/nmeth.2019 · 2012 · External reference
Optical coherence tomography in biofilm research: a comprehensive review
10.1002/bit.26283 · 2017 · External reference
Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves
10.1186/s12859-016-1016-7 · 2016 · External reference
Pneumonia infection in mice reveals the involvement of the feoA gene in the pathogenesis of Acinetobacter baumannii
10.1080/21505594.2017.1420451 · 2018 · External reference
Feo – transport of ferrous iron into bacteria
10.1007/s10534-006-0003-2 · 2006 · External reference
Pseudomonas aeruginosa adapts its iron uptake strategies in function of the type of infections
10.3389/fcimb.2013.00075 · 2013 · External reference
Ferrous iron is a significant component of bioavailable iron in cystic fibrosis airways
10.1128/mbio.00557-13 · 2013 · External reference
Pseudomonas aeruginosa uses multiple pathways to acquire iron during chronic infection in cystic fibrosis lungs
10.1128/iai.00418-13 · 2013 · External reference
Toward a mechanistic understanding of Feo-mediated ferrous iron uptake
10.1039/c8mt00097b · 2018 · External reference
Phenazine-1-carboxylic acid promotes bacterial biofilm development via ferrous iron acquisition
10.1128/jb.00396-11 · 2011 · External reference
Structural model of FeoB, the iron transporter from Pseudomonas aeruginosa, predicts a cysteine lined, GTP-gated pore
10.1042/bsr20160046 · 2016 · External reference
The ferrous iron transporter FeoB mediates motility, biofilm formation, and virulence in Aeromonas veronii
10.1016/j.micpath.2025.108014 · 2025 · External reference
A chemosensory system that regulates biofilm formation through modulation of cyclic diguanylate levels
10.1073/pnas.0507170102 · 2005 · External reference
BifA, a cyclic-di-GMP phosphodiesterase, inversely regulates biofilm formation and swarming motility by Pseudomonas aeruginosa PA14
10.1128/jb.00586-07 · 2007 · External reference
The dual GGDEF/EAL domain enzyme PA0285 is a Pseudomonas species housekeeping phosphodiesterase regulating early attachment and biofilm architecture
10.1016/j.jbc.2024.105659 · 2024 · External reference
Identification and characterization of a phosphodiesterase that inversely regulates motility and biofilm formation in Vibrio cholerae
10.1128/jb.00209-10 · 2010 · External reference
GepA, a GGDEF-EAL protein, regulates biofilm formation and swimming motility in Vibrio parahaemolyticus
10.1007/s00203-025-04282-7 · 2025 · External reference
Three cyanobacteriochromes work together to form a light color-sensitive input system for c-di-GMP signaling of cell aggregation
10.1073/pnas.1504228112 · 2015 · External reference
Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP
10.1074/jbc.m504429200 · 2005 · External reference
Methyl-accepting chemotaxis proteins: a core sensing element in prokaryotes and archaea
10.1007/s00018-017-2514-0 · 2017 · External reference
Controlling biofilm development through cyclic di-GMP signaling
10.1007/978-3-031-08491-1_3 · 2022 · External reference
Surface sensing and lateral subcellular localization of WspA, the receptor in a chemosensory-like system leading to c-di-GMP production
10.1111/mmi.12013 · 2012 · External reference
Sinorhizobium meliloti flavin secretion and bacteria-host interaction: role of the bifunctional RibBA protein
10.1094/mpmi-11-13-0338-r · 2014 · External reference
Extracellular riboflavin induces anaerobic biofilm formation in Shewanella oneidensis
10.1186/s13068-021-01981-3 · 2021 · External reference
Shewanella secretes flavins that mediate extracellular electron transfer
10.1073/pnas.0710525105 · 2008 · External reference
Overlapping riboflavin supply pathways in bacteria
10.1080/1040841x.2016.1192578 · 2017 · External reference
In vivo effect of NusB and NusG on rRNA transcription antitermination
10.1128/jb.186.5.1304-1310.2004 · 2004 · External reference
A regulatory RNA required for antitermination of biofilm and capsular polysaccharide operons in Bacillales
10.1111/j.1365-2958.2010.07131.x · 2010 · External reference
The transcriptional factors MurR and catabolite activator protein regulate N-Acetylmuramic acid catabolism in Escherichia coli
10.1128/jb.00642-08 · 2008 · External reference
On the ancestral UDP-glucose pyrophosphorylase activity of GalF from Escherichia coli
10.3389/fmicb.2015.01253 · 2015 · External reference
Contribution of GalU to biofilm formation, motility, antibiotic and serum resistance, and pathogenicity of Salmonella typhimurium
10.3389/fcimb.2023.1149541 · 2023 · External reference
Characterization of Vibrio cholerae O1 El Tor galU and galE mutants: influence on lipopolysaccharide structure, colonization, and biofilm formation
10.1128/iai.69.1.435-445.2001 · 2001 · External reference
Streptococcus pneumoniae galU gene mutation has a direct effect on biofilm growth, adherence and phagocytosis in vitro and pathogenicity in vivo
10.1093/femspd/fty069 · 2018 · External reference
Effects of galU on bacterial physiology and responses to surfactants and antibiotics in Pseudomonas nitroreducens TX1
10.1016/j.ibiod.2025.106072 · 2025 · External reference
A-to-I RNA editing in bacteria increases pathogenicity and tolerance to oxidative stress
10.1371/journal.ppat.1008740 · 2020 · External reference
PA5339, a RidA homolog, is required for full growth in Pseudomonas aeruginosa
10.1128/jb.00434-18 · 2018 · External reference
The cysteine desulfurase IscS is a significant target of 2-Aminoacrylate damage in Pseudomonas aeruginosa
10.1128/mbio.01071-22 · 2022 · External reference
Biofilm formation by hyperpiliated mutants of Pseudomonas aeruginosa
10.1128/jb.185.7.2374-2378.2003 · 2003 · External reference
Genetic identification of a PilT motor in Geobacter sulfurreducens reveals a role for pilus retraction in extracellular electron transfer
10.3389/fmicb.2016.01578 · 2016 · External reference
Biofilms: an emergent form of bacterial life
10.1038/nrmicro.2016.94 · 2016 · External reference
CdpA is a Burkholderia pseudomallei cyclic di-GMP phosphodiesterase involved in autoaggregation, flagellum synthesis, motility, biofilm formation, cell invasion, and cytotoxicity
10.1128/iai.00446-09 · 2010 · External reference
The phosphodiesterase activity of the HmsP EAL domain is required for negative regulation of biofilm formation in Yersinia pestis
10.1016/j.femsle.2005.04.036 · 2005 · External reference
Biofilm development of an opportunistic model bacterium analysed at high spatiotemporal resolution in the framework of a precise flow cell
10.1038/npjbiofilms.2016.23 · 2016 · External reference
Diffusion in biofilms
10.1128/jb.185.5.1485-1491.2003 · 2003 · External reference
Spatial patterns of DNA replication, protein synthesis, and oxygen concentration within bacterial biofilms reveal diverse physiological states
10.1128/jb.00107-07 · 2007 · External reference
Internal and external mass transfer in biofilms grown at various flow velocities
10.1021/bp010129s · 2008 · External reference
Chemical signaling in biofilm-mediated biofouling
10.1038/s41589-024-01740-z · 2024 · External reference
The response of Cupriavidus metallidurans CH34 to Cadmium involves inhibition of the initiation of biofilm formation, decrease in intracellular c-di-GMP levels, and a novel metal regulated phosphodiesterase
10.3389/fmicb.2019.01499 · 2019 · External reference
Retrieving of diguanylate cyclases responsible for biofilm formation and antibiotic resistance in Acinetobacter baumannii
10.1186/s12866-026-05003-w · 2026 · External reference