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References from Thresholded acidity–oxygen stress activates Acetilactobacillus jinshanensis and drives a shift toward deterministic community assembly during breakpoint fermentation. Local targets link to admitted publications; unresolved targets remain external evidence.
Biosynthesis gene cluster-containing species drive microbial community stability under thermal stress through enhanced ecological cohesion
10.1002/imo2.70082 · 2026 · External reference
eggNOG-mapper v2: Functional annotation, orthology assignments, and domain prediction at the metagenomic scale
10.1093/molbev/msab293 · 2021 · External reference
Oxygen influences spatial heterogeneity and microbial succession dynamics during Baijiu stacking process
10.1016/j.biortech.2024.130854 · 2024 · External reference
Deciphering the acidophilia and acid resistance in Acetilactobacillus jinshanensis dominating baijiu fermentation through multi-omics analysis
10.1016/j.fm.2024.104655 · 2025 · External reference
Quorum sensing-associated acid adaptation in bacterial communities during pit fermentation of sauce-flavor Baijiu
10.1016/j.ijfoodmicro.2026.111715 · 2026 · External reference
Affinity difference determines the assembly and interaction mode of anammox community reconstructed by siderophores
10.1016/j.scitotenv.2023.165278 · 2023 · External reference
Microbial interactions: from networks to models
10.1038/nrmicro2832 · 2012 · External reference
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
10.1038/s41467-022-31343-y · 2022 · External reference
A model selection approach to structural equation modelling: a critical evaluation and a road map for ecologists
10.1111/2041-210x.13742 · 2022 · External reference
Emergent simplicity in microbial community assembly
10.1126/science.aat1168 · 2018 · External reference
In Vitro community synergy between bacterial soil isolates can be facilitated by pH stabilization of the environment
10.1128/aem.01450-18 · 2018 · External reference
Prodigal: prokaryotic gene recognition and translation initiation site identification
10.1186/1471-2105-11-119 · 2010 · External reference
The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium
10.1038/nrmicro3032 · 2013 · External reference
Modeling and regulation of higher alcohol production through the combined effects of the C/N ratio and microbial interaction
10.1021/acs.jafc.9b04545 · 2019 · External reference
Principal component analysis: a review and recent developments
2016 · External reference
Reactive oxygen species, toxicity, oxidative stress, and antioxidants: chronic diseases and aging
10.1007/s00204-023-03562-9 · 2023 · External reference
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct graph
10.1093/bioinformatics/btv033 · 2015 · External reference
Regulation of species metabolism in synthetic community systems by environmental pH oscillations
10.1038/s41467-023-43398-6 · 2023 · External reference
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
10.1093/bioinformatics/btl158 · 2006 · External reference
Slower-growing species promote interspecific cooperation and coexistence under acid stress through cross-feeding
10.1038/s41467-025-67395-z · 2026 · External reference
Enzymatic determination of total starch and degree of starch gelatinization in various products
10.1016/j.foodhyd.2019.105639 · 2020 · External reference
Coping with low pH: molecular strategies in neutralophilic bacteria
10.1111/1574-6976.12076 · 2014 · External reference
Community context reshapes microbial proteomes and reduces functional overlap
10.1038/s41564-026-02310-w · 2026 · External reference
A general framework for quantitatively assessing ecological stochasticity
10.1073/pnas.1904623116 · 2019 · External reference
A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming
10.1038/s41467-020-18560-z · 2020 · External reference
Mechanisms underlying lactic acid tolerance and its influence on lactic acid production in Saccharomyces cerevisiae
10.15698/mic2021.06.751 · 2021 · External reference
Modifying and reacting to the environmental pH can drive bacterial interactions
10.1371/journal.pbio.2004248 · 2018 · External reference
Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data
10.1038/s41596-021-00508-2 · 2021 · External reference
Quantifying the roles of immigration and chance in shaping prokaryote community structure
10.1111/j.1462-2920.2005.00956.x · 2006 · External reference
Estimating and mapping ecological processes influencing microbial community assembly
10.3389/fmicb.2015.00370 · 2015 · External reference
Soil pH mediates the balance between stochastic and deterministic assembly of bacteria
10.1038/s41396-018-0082-4 · 2018 · External reference
Microbiome diversity and evolution in stacking fermentation during different rounds of Jiang-flavoured Baijiu brewing
10.1016/j.lwt.2021.111119 · 2021 · External reference
Can we control microbiota in spontaneous food fermentation? – Chinese liquor as a case example
10.1016/j.tifs.2021.02.011 · 2021 · External reference
Stochastic community assembly: does it matter in microbial ecology?
10.1128/mmbr.00002-17 · 2017 · External reference