Research graph
References from Genomic potential for complete denitrification by Desulfobacillus in anammox bioreactors. Local targets link to admitted publications; unresolved targets remain external evidence.
Structural and redox plasticity in the heterodimeric periplasmic nitrate reductase
10.1038/nsb994 · 2003 · External reference
Fast and sensitive protein alignment using DIAMOND
10.1038/nmeth.3176 · 2015 · External reference
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
10.1093/bioinformatics/btp348 · 2009 · External reference
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning
10.1038/s41592-023-01940-w · 2023 · External reference
Unraveling nitrogen, sulfur, and carbon metabolic pathways and microbial community transcriptional responses to substrate deprivation and toxicity stresses in a bioreactor mimicking anoxic brackish coastal sediment conditions
10.3389/fmicb.2022.798906 · 2022 · External reference
An integrated pipeline for annotation and visualization of metagenomic contigs
10.3389/fgene.2019.00999 · 2019 · External reference
Partial denitrification providing nitrite: Opportunities of extending application for anammox
10.1016/j.envint.2019.105001 · 2019 · External reference
Community-led, integrated, reproducible multi-omics with anvi'o
10.1038/s41564-020-00834-3 · 2021 · External reference
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria
10.1038/nature08883 · 2010 · External reference
Clinker & clustermap.js: automatic generation of gene cluster comparison figures
10.1093/bioinformatics/btab007 · 2021 · External reference
Ultra-stable mixotrophic denitrification coupled with anammox under organic stress for mainstream municipal wastewater treatment
10.1016/j.watres.2023.120932 · 2024 · External reference
Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo-electron microscopy
10.1126/sciadv.aax1803 · 2019 · External reference
Structural basis of biological N2O generation by bacterial nitric oxide reductase
10.1126/science.1195591 · 2010 · External reference
Cold seeps are potential hotspots of deep-sea nitrogen loss driven by microorganisms across 21 phyla
10.1038/s41467-025-56774-1 · 2025 · External reference
Highly accurate protein structure prediction with AlphaFold
10.1038/s41586-021-03819-2 · 2021 · External reference
Sewage treatment with anammox
10.1126/science.1185941 · 2010 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
Metabolic network analysis reveals microbial community interactions in anammox granules
10.1038/ncomms15416 · 2017 · External reference
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
10.1093/nar/gkae268 · 2024 · External reference
Successful start-up of the anammox process in constructed wetland microcosms: influence of the electron acceptors on performance, microbial community, and functional genes
10.1007/s11356-018-3996-5 · 2019 · External reference
Influences of fluctuating nutrient loadings on nitrate-reducing microorganisms in rivers
10.1093/ismeco/ycae168 · 2025 · External reference
Crystal structure of quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus
10.1038/nsmb.2213 · 2012 · External reference
ColabFold: making protein folding accessible to all
10.1038/s41592-022-01488-1 · 2022 · External reference
Evolution of quinol oxidation within the heme-copper oxidoreductase superfamily
10.1016/j.bbabio.2022.148907 · 2022 · External reference
Diversity and evolution of nitric oxide reduction in bacteria and archaea
10.1073/pnas.2316422121 · 2024 · External reference
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
10.1093/molbev/msu300 · 2015 · External reference
Deciphering the adaptation mechanism of anammox consortia under sulfamethoxazole stress: A model coupling resistance accumulation and interspecies-cooperation
10.1016/j.jhazmat.2024.135074 · 2024 · External reference
Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor
10.1002/mbo3.1227 · 2021 · External reference
The physiological potential of anammox bacteria as revealed by their core genome structure
10.1093/dnares/dsaa028 · 2021 · External reference
Methane-dependent extracellular electron transfer at the bioanode by the anaerobic archaeal methanotroph “Candidatus Methanoperedens”
10.3389/fmicb.2022.820989 · 2022 · External reference
Mechanisms of extracellular electron transfer in anaerobic methanotrophic archaea
10.1038/s41467-024-45758-2 · 2024 · External reference
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
10.1038/nbt.4229 · 2018 · External reference
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
10.1093/molbev/msp077 · 2009 · External reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · 2013 · External reference
Functional, biochemical and genetic diversity of prokaryotic nitrate reductases
10.1007/pl00000845 · 2001 · External reference
Mg2+ and magnesium ammonium phosphate (MAP)-induced anammox granulation for comparable nitrogen removal: Implementation pathways and microbial mechanisms
10.1016/j.watres.2024.122954 · 2025 · External reference
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
10.1038/s41467-021-22203-2 · 2021 · External reference
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
10.1038/nbt.3988 · 2017 · External reference
Missing lithotroph identified as new planctomycete
10.1038/22749 · 1999 · External reference
Biofilm colonization and succession in a full-scale partial nitritation-anammox moving bed biofilm reactor
10.1186/s40168-024-01762-8 · 2024 · External reference
Molecular insight into the allocation of organic carbon to heterotrophic bacteria: Carbon metabolism and the involvement in nitrogen and phosphorus removal
10.1016/j.scitotenv.2024.173302 · 2024 · External reference
A comprehensive catalog encompassing 1376 species-level genomes reveals the core community and functional diversity of anammox microbiota
10.1016/j.watres.2024.122356 · 2024 · External reference
Sulfide addition accelerates anammox sludge granulation and promotes microbial cooperation
2025 · External reference
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
10.1093/bioinformatics/btp033 · 2009 · External reference
Physiological role of the respiratory quinol oxidase in the anaerobic nitrite-reducing methanotroph 'Candidatus Methylomirabilis oxyfera'
10.1099/mic.0.045187-0 · 2011 · External reference
Disentangling microbial syntrophic mechanisms for hexavalent chromium reduction in autotrophic biosystems
10.1021/acs.est.1c00383 · 2021 · External reference
Anammox activity improved significantly by the cross-fed NO from ammonia-oxidizing bacteria and denitrifying bacteria to anammox bacteria
10.1016/j.watres.2023.120986 · 2024 · External reference
Genome-centered metagenomics analysis reveals the symbiotic organisms possessing ability to cross-feed with anammox bacteria in anammox consortia
10.1021/acs.est.8b02599 · 2018 · External reference
Insights into the carbon and nitrogen metabolism pathways in mixed-autotrophy/heterotrophy anammox consortia in response to temperature reduction
2025 · External reference
Unraveling the role of formate in improving nitrogen removal via coupled partial denitrification-anammox
10.1007/s11783-024-1872-8 · 2024 · External reference
