Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Research graph
References from Differential formation of nitrate-responsive mycobacterial intracytoplasmic membranes during Mycobacterium tuberculosis infection. Local targets link to admitted publications; unresolved targets remain external evidence.
Bacterial microcompartments
10.1038/nrmicro.2018.10 · 2018 · External reference
Bacterial Nanocompartments: Structures, Functions, and Applications
10.1128/jb.00346-21 · 2022 · External reference
Bacterial Intracellular Membranes
2020 · External reference
Structure, Function and Formation of Bacterial Intracytoplasmic Membranes
2006 · External reference
A new view into prokaryotic cell biology from electron cryotomography
10.1038/nrmicro.2016.7 · 2016 · External reference
In situ imaging of bacterial outer membrane projections and associated protein complexes using electron cryo-tomography
10.7554/elife.73099 · 2021 · External reference
Probing the biogenesis pathway and dynamics of thylakoid membranes
10.1038/s41467-021-23680-1 · 2021 · External reference
Restricted Localization of Photosynthetic Intracytoplasmic Membranes (ICMs) in Multiple Genera of Purple Nonsulfur Bacteria
10.1128/mbio.00780-18 · 2018 · External reference
Complete nitrification by Nitrospira bacteria
10.1038/nature16461 · 2015 · External reference
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
10.1038/nature06411 · 2007 · External reference
Transcriptional Adaptation of Mycobacterium tuberculosis within Macrophages : Insights into the Phagosomal Environment
10.1084/jem.20030846 · 2003 · External reference
Genetically encoded transcriptional plasticity underlies stress adaptation in Mycobacterium tuberculosis
10.1038/s41467-024-47410-5 · 2024 · External reference
sigmaB-dependent gene induction and expression in Listeria monocytogenes during osmotic and acid stress conditions simulating the intestinal environment
2004 · External reference
Transcriptional adaptation of Shigella flexneri during adherence to epithelial cells
10.1002/jobm.201400414 · 2015 · External reference
Bacterial Internalization, Localization, and Effectors Shape the Epithelial Immune Response during Shigella flexneri Infection
10.1128/iai.00574-15 · 2015 · External reference
Unresolved reference
2024 · External reference
Contrasting phagosome pH regulation and maturation in human M1 and M2 macrophages
10.1091/mbc.e14-05-0967 · 2014 · External reference
Intraphagosomal measurement of the magnitude and duration of the oxidative burst
10.1111/j.1600-0854.2008.00877.x · 2009 · External reference
Linking the transcriptional profiles and the physiological states of Mycobacterium tuberculosis during an extended intracellular infection
10.1371/journal.ppat.1002769 · 2012 · External reference
Evolution and emergence of Mycobacterium tuberculosis
10.1093/femsre/fuae006 · 2024 · External reference
Phagosomal Rupture by Mycobacterium tuberculosis Results in Toxicity and Host Cell Death
10.1371/journal.ppat.1002507 · 2012 · External reference
Mycobacterium tuberculosis: Bacterial Fitness within the Host Macrophage
10.1128/microbiolspec.bai-0001-2019 · 2019 · External reference
Nitrite produced by Mycobacterium tuberculosis in human macrophages in physiologic oxygen impacts bacterial ATP consumption and gene expression
10.1073/pnas.1316894110 · 2013 · External reference
Mycobacterium tuberculosis has diminished capacity to counteract redox stress induced by elevated levels of endogenous superoxide
10.1016/j.freeradbiomed.2015.03.008 · 2015 · External reference
Mycobacterial survival strategies in the phagosome: defence against host stresses
10.1111/j.1462-5822.2009.01335.x · 2009 · External reference
The Response of Mycobacterium Tuberculosis to Reactive Oxygen and Nitrogen Species
10.3389/fmicb.2011.00105 · 2011 · External reference
Mathematical Model of Oxygen Transport in Tuberculosis Granulomas
10.1007/s10439-015-1415-3 · 2016 · External reference
Tuberculous granulomas are hypoxic in guinea pigs, rabbits, and nonhuman primates
10.1128/iai.01515-07 · 2008 · External reference
Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis
10.1046/j.1365-2958.2003.03474.x · 2003 · External reference
Changes in energy metabolism of Mycobacterium tuberculosis in mouse lung and under in vitro conditions affecting aerobic respiration
10.1073/pnas.0507850102 · 2005 · External reference
The Intracellular Environment of Human Macrophages That Produce Nitric Oxide Promotes Growth of Mycobacteria
10.1128/iai.00611-13 · 2013 · External reference
Role of narK2X and narGHJI in Hypoxic Upregulation of Nitrate Reduction by Mycobacterium tuberculosis
10.1128/jb.185.24.7247-7256.2003 · 2003 · External reference
Dependence of Mycobacterium bovis BCG on Anaerobic Nitrate Reductase for Persistence Is Tissue Specific
10.1128/iai.70.1.286-291.2002 · 2002 · External reference
Nitrate Enhances the Survival of Mycobacterium tuberculosis during Inhibition of Respiration
10.1128/jb.01857-07 · 2008 · External reference
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
10.1038/31159 · 1998 · External reference
Mycobacterium tuberculosis Response Regulators, DevR and NarL, Interact in Vivo and Co-regulate Gene Expression during Aerobic Nitrate Metabolism
10.1074/jbc.m114.591800 · 2015 · External reference
The primary mechanism of attenuation of bacillus Calmette-Guerin is a loss of secreted lytic function required for invasion of lung interstitial tissue
10.1073/pnas.1635213100 · 2003 · External reference
Direct visualization of the outer membrane of mycobacteria and corynebacteria in their native state
10.1128/jb.01919-07 · 2008 · External reference
Disclosure of the mycobacterial outer membrane: Cryo-electron tomography and vitreous sections reveal the lipid bilayer structure
10.1073/pnas.0709530105 · 2008 · External reference
Bdellovibrio predation cycle characterized at nanometre-scale resolution with cryo-electron tomography
10.1038/s41564-023-01401-2 · 2023 · External reference
Morphological remodeling of Coxiella burnetii during its biphasic developmental cycle revealed by cryo-electron tomography
10.1016/j.isci.2023.107210 · 2023 · External reference
A Cristae-Like Microcompartment in Desulfobacterota
10.1128/mbio.01613-22 · 2022 · External reference
Intracytoplasmic-membrane development in alphaproteobacteria involves the homolog of the mitochondrial crista-developing protein Mic60
10.1016/j.cub.2023.03.049 · 2023 · External reference
ESX secretion systems: mycobacterial evolution to counter host immunity
10.1038/nrmicro.2016.131 · 2016 · External reference
Mycobacterium tuberculosis Lineage 4 comprises globally distributed and geographically restricted sublineages
10.1038/ng.3704 · 2016 · External reference
Comparison of the proteome of Mycobacterium tuberculosis strain H37Rv with clinical isolate CDC 1551
10.1099/00221287-146-12-3205 · 2000 · External reference
Virulence of Mycobacterium tuberculosis CDC1551 and H37Rv in Rabbits Evaluated by Lurie’s Pulmonary Tubercle Count Method
10.1128/iai.67.9.4931-4934.1999 · 1999 · External reference
Mycobacterium tuberculosis H37Rv has a single nucleotide polymorphism in PhoR which affects cell wall hydrophobicity and gene expression
10.1099/mic.0.000036 · 2015 · External reference
Dissecting the mycobacterial cell envelope and defining the composition of the native mycomembrane
10.1038/s41598-017-12718-4 · 2017 · External reference
DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks
2022 · External reference
Role of Protein Kinase G in Growth and Glutamine Metabolism of Mycobacterium bovis BCG
10.1128/jb.187.16.5852-5856.2005 · 2005 · External reference
The NarX and NarQ sensor-transmitter proteins of Escherichia coli each require two conserved histidines for nitrate-dependent signal transduction to NarL
10.1128/jb.177.9.2416-2424.1995 · 1995 · External reference
The Anaerobic Regulatory Network Required for Pseudomonas aeruginosa Nitrate Respiration
10.1128/jb.00240-07 · 2007 · External reference
Evaluation of nitrite production by human monocyte-derived macrophages
10.1016/0006-291x(92)90813-z · 1992 · External reference
Mycobacterium tuberculosis CDC1551 Induces a More Vigorous Host Response In Vivo and In Vitro, But Is Not More Virulent Than Other Clinical Isolates1
10.4049/jimmunol.162.11.6740 · 1999 · External reference
Role of Interleukin 6 in Innate Immunity to Mycobacterium tuberculosis Infection
10.1093/infdis/jit037 · 2013 · External reference
The shapeshifting Helicobacter pylori: From a corkscrew to a ball
10.1111/mmi.15218 · 2024 · External reference
Morphological and Physiological Responses of Campylobacter jejuni to Stress
10.4315/0362-028x-69.11.2747 · 2006 · External reference
Survival of Vibrio parahaemolyticus at low temperatures under starvation conditions and subsequent resuscitation of viable, nonculturable cells
10.1128/aem.62.4.1300-1305.1996 · 1996 · External reference
Antibiotic Resistance via Bacterial Cell Shape-Shifting
10.1128/mbio.00659-22 · 2022 · External reference
Morphological changes of Vibrio parahaemolyticus under cold and starvation stresses
10.1016/j.ijfoodmicro.2008.11.009 · 2009 · External reference
Transcriptional Alterations of Virulence-Associated Genes in Extended Spectrum Beta-Lactamase (ESBL)-Producing Uropathogenic Escherichia coli during Morphologic Transitions Induced by Ineffective Antibiotics
10.3389/fmicb.2017.01058 · 2017 · External reference
10.1128/aem.31.5.789-800.1976
10.1128/aem.31.5.789-800.1976 · External reference
Unresolved reference
External reference
EspC forms a filamentous structure in the cell envelope of Mycobacterium tuberculosis and impacts ESX-1 secretion
10.1111/mmi.13575 · 2017 · External reference
Structural and functional analysis of the Mycobacterium tuberculosis MmpS5L5 efflux pump presages a pathway to increased bedaquiline resistance. 2025
10.1073/pnas.2516660122 · 2025 · External reference
Specialized Listeria monocytogenes produce tailocins to provide a population-level competitive growth advantage
10.1038/s41564-024-01793-9 · 2024 · External reference
Membrane invagination in Rhodobacter sphaeroides is initiated at curved regions of the cytoplasmic membrane, then forms both budded and fully detached spherical vesicles
10.1111/j.1365-2958.2010.07153.x · 2010 · External reference
Protein translocation and thylakoid biogenesis in cyanobacteria
10.1016/j.bbabio.2015.08.010 · 2016 · External reference
Structure, biogenesis, and evolution of thylakoid membranes
10.1093/plcell/koae102 · 2024 · External reference
Evolution of Thylakoid Structural Diversity
10.1146/annurev-cellbio-120823-022747 · 2024 · External reference
Immunocytochemical localization of membrane-bound ammonia monooxygenase in cells of ammonia oxidizing bacteria
10.1007/s00203-005-0074-4 · 2006 · External reference
Structural basis for transcription activation by the nitrate-responsive regulator NarL
10.1093/nar/gkad1231 · 2024 · External reference
Nitrate sensing and metabolism modulate motility, biofilm formation, and virulence in Pseudomonas aeruginosa
10.1128/iai.00201-07 · 2007 · External reference
The NarX-NarL two-component system regulates biofilm formation, natural product biosynthesis, and host-associated survival in Burkholderia pseudomallei
10.1038/s41598-021-04053-6 · 2022 · External reference
Synthesis of the NarP response regulator of nitrate respiration in Escherichia coli is regulated at multiple levels by Hfq and small RNAs
10.1093/nar/gkac504 · 2022 · External reference
Role of the dosR-dosS two-component regulatory system in Mycobacterium tuberculosis virulence in three animal models
10.1128/iai.01117-08 · 2009 · External reference
DevS/DosS sensor is bifunctional and its phosphatase activity precludes aerobic DevR/DosR regulon expression in Mycobacterium tuberculosis
10.1111/febs.13787 · 2016 · External reference
Mycobacterium abscessus DosRS two-component system controls a species-specific regulon required for adaptation to hypoxia
10.3389/fcimb.2023.1144210 · 2023 · External reference
Limitations of the Mycobacterium tuberculosis reference genome H37Rv in the detection of virulence-related loci
10.1016/j.ygeno.2017.07.004 · 2017 · External reference
An outbreak involving extensive transmission of a virulent strain of Mycobacterium tuberculosis
10.1056/nejm199803053381001 · 1998 · External reference
Virulence of Selected Mycobacterium tuberculosis Clinical Isolates in the Rabbit Model of Meningitis Is Dependent on Phenolic Glycolipid Produced by the Bacilli
10.1086/430614 · 2005 · External reference
Optimized Sleeping Beauty transposons rapidly generate stable transgenic cell lines
10.1002/biot.201400821 · 2015 · External reference
The pMy vector series: A versatile cloning platform for the recombinant production of mycobacterial proteins in Mycobacterium smegmatis
10.1002/pro.3962 · 2020 · External reference
Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging
10.1016/j.jsb.2016.06.007 · 2017 · External reference
Tomo Live: an on-the-fly reconstruction pipeline to judge data quality for cryo-electron tomography workflows
10.1107/s2059798324001840 · 2024 · External reference
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
10.1038/nmeth.4193 · 2017 · External reference
Automated tilt series alignment and tomographic reconstruction in IMOD
10.1016/j.jsb.2016.07.011 · 2017 · External reference
CTF determination and correction for low dose tomographic tilt series
10.1016/j.jsb.2009.08.016 · 2009 · External reference
Isotropic reconstruction for electron tomography with deep learning
10.1038/s41467-022-33957-8 · 2022 · External reference
AreTomo: An integrated software package for automated marker-free, motion-corrected cryo-electron tomographic alignment and reconstruction
2022 · External reference
10.21203/rs.3.rs-6215076/v1
10.21203/rs.3.rs-6215076/v1 · External reference
10.1101/2024.01.05.574336
10.1101/2024.01.05.574336 · External reference
Unresolved reference
External reference
pytom-match-pick: A tophat-transform constraint for automated classification in template matching
2025 · External reference
ArtiaX: An electron tomography toolbox for the interactive handling of sub-tomograms in UCSF ChimeraX
10.1002/pro.4472 · 2022 · External reference
Fiji - an Open Source platform for biological image analysis
10.1038/nmeth.2019 · 2012 · External reference
Statistical Analysis of Post-Translational Modifications Quantified by Label-Free Proteomics Across Multiple Biological Conditions with R: Illustration from SARS-CoV-2 Infected Cells
2023 · External reference
A peptide-level multiple imputation strategy accounting for the different natures of missing values in proteomics data
2020 · External reference
limma powers differential expression analyses for RNA-sequencing and microarray studies
10.1093/nar/gkv007 · 2015 · External reference
Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments
10.1002/pmic.201500189 · 2016 · External reference
Robust estimation of the false discovery rate
10.1093/bioinformatics/btl328 · 2006 · External reference
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
10.1006/jmbi.2000.4315 · 2001 · External reference
DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)
10.1093/nar/gkac194 · 2022 · External reference
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
10.1038/nprot.2008.211 · 2009 · External reference
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
10.1006/meth.2001.1262 · 2001 · External reference
RNAsnap™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria
10.1093/nar/gks680 · 2012 · External reference
Accurate structure prediction of biomolecular interactions with AlphaFold 3
10.1038/s41586-024-07487-w · 2024 · External reference