Research graph
References from Allergenic protein classification with cross-modal fusion of physicochemical and structural features. Local targets link to admitted publications; unresolved targets remain external evidence.
PepSeA: Peptide sequence alignment and visualization tools to enable lead optimization
10.1021/acs.jcim.1c01360 · 2022 · External reference
SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence
10.1093/nar/gkg600 · 2003 · External reference
Bias in random forest variable importance measures: Illustrations, sources and a solution
10.1186/1471-2105-8-25 · 2007 · External reference
COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps
10.1093/nar/gkv1324 · 2016 · External reference
LIBSVM: A library for support vector machines
2007 · External reference
UniProt: the universal protein knowledgebase in 2025
2024 · External reference
The impact of structural diversity and parameterization on maps of the protein universe
10.1186/1753-6561-7-s7-s1 · 2013 · External reference
AllerTOP v.2–a server for in silico prediction of allergens
10.1007/s00894-014-2278-5 · 2014 · External reference
Unresolved reference
2023 · External reference
Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application
10.1002/bip.22066 · 2012 · External reference
Unresolved reference
2021 · External reference
Classification of protein sequences by a novel alignment-free method on bacterial and virus families
10.3390/genes13101744 · 2022 · External reference
Prediction of DNA binding proteins using local features and long-term dependencies with primary sequences based on deep learning
2021 · External reference
Development of hypoallergenic variants of the major horse allergen Equ c 1 for immunotherapy by rational structure based engineering
10.1038/s41598-019-56812-1 · 2019 · External reference
Unresolved reference
2024 · External reference
Unresolved reference
2022 · External reference
A novel adaptive optimization framework for SVM hyper-parameters tuning in non-stationary environment: A case study on intrusion detection system
2023 · External reference
ProAll - D: protein allergen detection using long short term memory - a deep learning approach
2022 · External reference
Graph-CAT: Graph Co-Attention Networks via local and global attribute augmentations
10.1016/j.future.2020.12.026 · 2021 · External reference
AllergenAI: a deep learning model predicting allergenicity based on protein sequence
10.1186/s12859-025-06302-1 · 2025 · External reference
Sequence based prediction of DNA-Binding proteins based on hybrid feature selection using random forest and Gaussian naive Bayes
10.1371/journal.pone.0086703 · 2014 · External reference
Diversity and relative levels of actinidin, kiwellin, and thaumatin-like allergens in 15 varieties of kiwifruit (Actinidia)
10.1021/jf304289f · 2013 · External reference
AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins
10.1371/journal.pone.0005861 · 2009 · External reference
IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction
10.1186/s12864-016-2931-8 · 2016 · External reference
Quantitative structure activity relationship modelling of peptides and proteins as a tool in food science
10.1016/j.tifs.2005.07.003 · 2005 · External reference
A large-scale evaluation of computational protein function prediction
10.1038/nmeth.2340 · 2013 · External reference
AllerTrans: a deep learning method for predicting the allergenicity of protein sequences
10.1093/biomethods/bpaf040 · 2025 · External reference
Database resources of the National Center for Biotechnology Information in 2025
10.1093/nar/gkad1044 · 2024 · External reference
Epithelial cell membrane perforation induces allergic airway inflammation
2025 · External reference
Allergenicity prediction by protein sequence
10.1096/fj.02-1052fje · 2003 · External reference
Effects of air pollution on Cup a 3 allergen in Cupressus arizonica pollen grains
10.1016/s1081-1206(10)60836-8 · 2008 · External reference
Combining high speed ELM learning with a deep convolutional neural network feature encoding for predicting protein-RNA interactions
2018 · External reference
Protein map: An alignment-free sequence comparison method based on various properties of amino acids
10.1016/j.gene.2011.07.002 · 2011 · External reference
Protein sequence comparison based on K-string dictionary
10.1016/j.gene.2013.07.092 · 2013 · External reference
NetAllergen, a random forest model integrating MHC-II presentation propensity for improved allergenicity prediction
2023 · External reference
Graph neural networks and attention-based CNN-LSTM for protein classification
2023 · External reference
Phylogenetic analysis of protein sequences based on a novel k -mer natural vector method
10.1016/j.ygeno.2018.08.010 · 2019 · External reference
A comprehensive survey on graph neural networks
2020 · External reference
Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application
10.1002/bip.22066 · ExternalCitation · doi-reference
AllerTOP v.2–a server for in silico prediction of allergens
10.1007/s00894-014-2278-5 · ExternalCitation · doi-reference
Graph-CAT: Graph Co-Attention Networks via local and global attribute augmentations
10.1016/j.future.2020.12.026 · ExternalCitation · doi-reference
Protein map: An alignment-free sequence comparison method based on various properties of amino acids
10.1016/j.gene.2011.07.002 · ExternalCitation · doi-reference
Protein sequence comparison based on K-string dictionary
10.1016/j.gene.2013.07.092 · ExternalCitation · doi-reference
Quantitative structure activity relationship modelling of peptides and proteins as a tool in food science
10.1016/j.tifs.2005.07.003 · ExternalCitation · doi-reference
Phylogenetic analysis of protein sequences based on a novel k -mer natural vector method
10.1016/j.ygeno.2018.08.010 · ExternalCitation · doi-reference
Effects of air pollution on Cup a 3 allergen in Cupressus arizonica pollen grains
10.1016/s1081-1206(10)60836-8 · ExternalCitation · doi-reference
PepSeA: Peptide sequence alignment and visualization tools to enable lead optimization
10.1021/acs.jcim.1c01360 · ExternalCitation · doi-reference
Diversity and relative levels of actinidin, kiwellin, and thaumatin-like allergens in 15 varieties of kiwifruit (Actinidia)
10.1021/jf304289f · ExternalCitation · doi-reference
A large-scale evaluation of computational protein function prediction
10.1038/nmeth.2340 · ExternalCitation · doi-reference
Development of hypoallergenic variants of the major horse allergen Equ c 1 for immunotherapy by rational structure based engineering
10.1038/s41598-019-56812-1 · ExternalCitation · doi-reference
AllerTrans: a deep learning method for predicting the allergenicity of protein sequences
10.1093/biomethods/bpaf040 · ExternalCitation · doi-reference
Database resources of the National Center for Biotechnology Information in 2025
10.1093/nar/gkad1044 · ExternalCitation · doi-reference
SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence
10.1093/nar/gkg600 · ExternalCitation · doi-reference
COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps
10.1093/nar/gkv1324 · ExternalCitation · doi-reference
Allergenicity prediction by protein sequence
10.1096/fj.02-1052fje · ExternalCitation · doi-reference
Bias in random forest variable importance measures: Illustrations, sources and a solution
10.1186/1471-2105-8-25 · ExternalCitation · doi-reference
The impact of structural diversity and parameterization on maps of the protein universe
10.1186/1753-6561-7-s7-s1 · ExternalCitation · doi-reference
AllergenAI: a deep learning model predicting allergenicity based on protein sequence
10.1186/s12859-025-06302-1 · ExternalCitation · doi-reference
IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction
10.1186/s12864-016-2931-8 · ExternalCitation · doi-reference
AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins
10.1371/journal.pone.0005861 · ExternalCitation · doi-reference
Sequence based prediction of DNA-Binding proteins based on hybrid feature selection using random forest and Gaussian naive Bayes
10.1371/journal.pone.0086703 · ExternalCitation · doi-reference
Classification of protein sequences by a novel alignment-free method on bacterial and virus families
10.3390/genes13101744 · ExternalCitation · doi-reference
