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References from Non-coding RNA (ncRNA) mediated regulation of stress adaptation, development and agronomic traits in wheat (Triticum spp.): Advances, challenges and translational prospects. Local targets link to admitted publications; unresolved targets remain external evidence.
Capturing wheat phenotypes at the genome level
10.3389/fpls.2022.851079 · 2022 · External reference
Characterizing and improving traits for resilient crop development
10.3389/fpls.2023.1307327 · 2023 · External reference
Nutritional value of wheat, triticale, barley and oat grains
10.21005/asp.2020.19.2.03 · 2020 · External reference
Projecting wheat demand in China and India for 2030 and 2050: implications for food security
10.3389/fnut.2022.1077443 · 2023 · External reference
Wheat production, trade, consumption, and stocks: global trends and prospects
2023 · External reference
Accelerating wheat improvement through trait characterization: advances and perspectives
10.1111/ppl.14544 · 2024 · External reference
Non-coding RNAs (ncRNAs) in plant: master regulators for adapting to extreme temperature conditions
10.1016/j.plaphy.2023.108164 · 2023 · External reference
Physiological roles of non-coding RNAs
10.1152/ajpcell.00114.2019 · 2019 · External reference
Decoding the non-coding: tools and databases unveiling the hidden world of “junk” RNAs for innovative therapeutic exploration
10.1021/acsptsci.3c00388 · 2024 · External reference
Dissecting the transcriptional regulatory networks of promoter-associated noncoding RNAs in development and cancer
10.1186/s13046-020-01552-8 · 2020 · External reference
The master role of siRNAs in plant immunity
10.1111/mpp.13250 · 2022 · External reference
Long non-coding RNAs: definitions, functions, challenges and recommendations
10.1038/s41580-022-00566-8 · 2023 · External reference
Enhancer RNAs (eRNAs): new insights into gene transcription and disease treatment
10.7150/jca.25829 · 2018 · External reference
RNA sequencing and co-expressed long non-coding RNAs in modern and wild wheats
10.1038/s41598-017-11170-8 · 2017 · External reference
10.1093/nsr/nwu006 · 2014 · Admitted local publication
The Emerging roles of non-coding RNAs in plant growth, development, and stress signaling
10.3390/ncrna10010013 · 2024 · External reference
Plant small RNAs: biogenesis, regulatory roles, and functions
10.1146/annurev-arplant-070122-035226 · 2023 · External reference
Highly integrated single-base resolution maps of the epigenome in
2008 · External reference
Exploring plant transcriptomes using ultra high-throughput sequencing
10.1093/bfgp/elp057 · 2010 · External reference
Identification and analysis of lncRNA and circRNA related to wheat grain development
10.3390/ijms25105484 · 2024 · External reference
lincRNAs: genomics, evolution, and mechanisms
10.1016/j.cell.2013.06.020 · 2013 · External reference
Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing
10.1093/bib/bbz151 · 2021 · External reference
An overview of databases and tools for lncRNA genomics advancing precision medicine
10.1007/978-981-16-5993-5_3 · 2022 · External reference
Role of non-coding RNAs in quality improvement of horticultural crops
10.1007/s10142-025-01592-3 · 2025 · External reference
Long non-coding RNAs and their biological roles in plants
10.1016/j.gpb.2015.02.003 · 2015 · External reference
ncPlantDB: a plant ncRNA database with potential ncPEP information and cell type-specific interaction
10.1093/nar/gkae1017 · 2025 · External reference
Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data
10.1038/s41598-017-01617-3 · 2017 · External reference
Opportunities and challenges of predictive approaches for non-coding RNAs in plants: opportunities and challenges
2022 · External reference
Research progress on plant long non-coding RNA
10.3390/plants9040408 · 2020 · External reference
RPITER: a hierarchical deep learning framework for ncRNA–protein interaction prediction
10.3390/ijms20051070 · 2019 · External reference
LPI-CNNCP: prediction of lncRNA–protein interactions using convolutional neural networks
10.1016/j.ab.2020.113767 · 2020 · External reference
SPDE: a multifunctional software for sequence processing and data extraction
10.1093/bioinformatics/btab235 · 2021 · External reference
miRNA-mediated regulation and interactions between plants and pathogens
10.3390/ijms22062913 · 2021 · External reference
The role of microRNAs in abiotic stress responses of plants
10.1134/s0026893316020102 · 2016 · External reference
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
10.1016/j.bbagrm.2011.05.001 · 2012 · External reference
A novel comprehensive wheat miRNA database, including related bioinformatics software
10.1016/j.cpb.2016.10.003 · 2016 · External reference
Wheat miRNA TaemiR408 acts as an essential mediator in plant tolerance to Pi deprivation and salt stress via modulating stress-associated physiological processes
10.3389/fpls.2018.00499 · 2018 · External reference
miRNA-based drought regulation in wheat
10.1007/s10142-015-0452-1 · 2016 · External reference
Novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.)
10.1007/s10142-014-0421-0 · 2015 · External reference
Response of microRNAs to cold treatment in the young spikes of common wheat
10.1186/s12864-017-3556-2 · 2017 · External reference
TaMIR1139: a wheat miRNA responsive to Pi-starvation, acts a critical mediator in modulating plant tolerance to Pi deprivation
10.1007/s00299-018-2313-6 · 2018 · External reference
Target of tae-miR408, a chemocyanin-like protein gene (TaCLP1), plays positive roles in wheat response to high-salinity, heavy cupric stress and stripe rust
10.1007/s11103-013-0101-9 · 2013 · External reference
Target gene of tae-miR164, a NAC transcription factor from the NAM subfamily, negatively regulates wheat resistance to stripe rust
10.1111/mpp.12089 · 2014 · External reference
Genome-wide fungal stress-responsive miRNA expression in wheat
10.1007/s00425-014-2153-8 · 2014 · External reference
Identification and analysis of powdery mildew‐responsive miRNAs in wheat
10.1111/jph.12315 · 2025 · External reference
Wheat miR9678 affects seed germination by generating phased siRNAs and modulating abscisic acid/gibberellin signaling
10.1105/tpc.17.00842 · 2018 · External reference
microRNA172 plays a crucial role in wheat spike morphogenesis and grain threshability
2017 · External reference
The tae-miR408-mediated control of TaTOC1 genes transcription is required for the regulation of heading time in wheat
10.1104/pp.15.01216 · 2016 · External reference
Novel insights into miRNA regulation of storage protein biosynthesis during wheat caryopsis development under drought stress
10.3389/fpls.2017.01707 · 2017 · External reference
MicroRNA-resistant alleles of HOMEOBOX DOMAIN-2 modify inflorescence branching and increase grain protein content of wheat
10.1126/sciadv.abn5907 · 2022 · External reference
The miR164–TaNAC14 module regulates root development and abiotic-stress tolerance in wheat seedlings
10.1016/j.jia.2022.08.016 · 2023 · External reference
Current status of microRNA‐mediated regulation of drought stress responses in cereals
10.1111/ppl.13451 · 2021 · External reference
The miR172/IDS1 signaling module confers salt tolerance through maintaining ROS homeostasis in cereal crops
10.1111/nph.17211 · 2021 · External reference
Superstar microRNA, miR156, involved in plant biological processes and stress response: A review
10.1016/j.scienta.2023.112010 · 2023 · External reference
Greater morphological and primary metabolic adaptations in roots contribute to phosphate-deficiency tolerance in the bread wheat cultivar Kenong199
10.1186/s12870-021-03164-6 · 2021 · External reference
Long-distance trafficking of mineral elements from soil-to-seed under climate change impacts crop nutritional quality
10.1111/pce.70507 · 2026 · External reference
MicroRNA-mediated regulatory networks for nitrogen use efficiency and modulating nitrogen starvation response
2026 · External reference
Long term nitrogen deficiency alters expression of miRNAs and alters nitrogen metabolism and root architecture in Indian dwarf wheat (Triticum sphaerococcum Perc.) genotypes
10.1038/s41598-023-31278-4 · 2023 · External reference
The Arabidopsis thaliana TCP transcription factors: a broadening horizon beyond development
10.1080/15592324.2015.1044192 · 2015 · External reference
Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum)
10.4238/vol9-2gmr805 · 2010 · External reference
Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat
10.1186/s12864-018-4727-5 · 2018 · External reference
Plant non-coding RNAs function in pollen development and male sterility
10.3389/fpls.2023.1109941 · 2023 · External reference
Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels
10.1186/s12870-020-2296-7 · 2020 · External reference
Long non-coding RNAs: new players in plants
10.3390/ijms23169301 · 2022 · External reference
Long noncoding RNA: unveiling hidden layer of gene regulatory networks
10.1016/j.tplants.2011.10.008 · 2012 · External reference
Cis-acting noncoding RNAs: friends and foes
10.1038/nsmb.2428 · 2012 · External reference
Identification of long non-coding RNA–mRNA interactions and genome-wide lncRNA annotation in animal transcriptome profiling
2023 · External reference
Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation
10.1016/j.csbj.2021.04.062 · 2021 · External reference
Survey of high throughput RNA-Seq data reveals potential roles for lncRNAs during development and stress response in bread wheat
10.3389/fpls.2017.01019 · 2017 · External reference
Genome-wide identification and characterization of long non-coding RNA in wheat roots in response to Ca2+ channel blocker
10.3389/fpls.2018.00244 · 2018 · External reference
Long non-coding RNAs in wild wheat progenitors
2018 · External reference
Abiotic stress signaling in wheat–an inclusive overview of hormonal interactions during abiotic stress responses in wheat
10.3389/fpls.2018.00734 · 2018 · External reference
Engineering salinity tolerance in plants: progress and prospects
10.1007/s00425-020-03366-6 · 2020 · External reference
Functional analysis of long non-coding RNAs involved in alkaline stress responses in wheat
10.1093/jxb/erac211 · 2022 · External reference
Heat stress effects on the reproductive physiology and yield of wheat
10.1111/jac.12572 · 2022 · External reference
Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing
10.1186/1471-2229-11-61 · 2011 · External reference
Regulatory Networks of lncRNAs, miRNAs, and mRNAs in response to heat stress in wheat (Triticum aestivum L.): an integrated analysis
2023 · External reference
Identification and characterization of long non‐coding RNAs as competing endogenous RNAs in the cold stress response of Triticum aestivum
10.1111/plb.13119 · 2020 · External reference
Transcriptomic response of durum wheat to cold stress at reproductive stage
10.1007/s11033-019-04704-y · 2019 · External reference
A long non-coding RNA lncRNA18313 regulates resistance against cadmium stress in wheat
2025 · External reference
Integrated physio-biochemical and RNA sequencing analysis revealed mechanisms of long non-coding RNA-mediated response to cadmium toxicity in wheat
10.1016/j.plaphy.2023.108028 · 2023 · External reference
Multi-omics uncover the mechanism of wheat under heavy metal stress
10.3390/ijms232415968 · 2022 · External reference
Wheat stripe (yellow) rust caused by Puccinia striiformis f. sp. tritici
10.1111/mpp.12116 · 2014 · External reference
Overview and application of QTL for adult plant resistance to leaf rust and powdery mildew in wheat
10.2135/cropsci2014.02.0162 · 2014 · External reference
Long non-coding genes implicated in response to stripe rust pathogen stress in wheat (Triticum aestivum L.)
10.1007/s11033-013-2736-7 · 2013 · External reference
Expression partitioning of homeologs and tandem duplications contribute to salt tolerance in wheat (Triticum aestivum L.)
10.1038/srep21476 · 2016 · External reference
Wheat long noncoding RNAs from organelle and nuclear genomes carry conserved microRNA precursors which may together comprise intricate networks in insect responses
10.3390/ijms24032226 · 2023 · External reference
Genome-wide profiling of long noncoding RNAs involved in wheat spike development
10.1186/s12864-021-07851-4 · 2021 · External reference
Population transcriptomic analysis identifies the comprehensive lncRNAs landscape of spike in wheat (Triticum aestivum L.)
10.1186/s12870-022-03828-x · 2022 · External reference
The molecular basis of vernalization-induced flowering in cereals
10.1016/j.tplants.2007.06.010 · 2007 · External reference
The vernalization-induced long non-coding RNA VAS functions with the transcription factor TaRF2b to promote TaVRN1 expression for flowering in hexaploid wheat
10.1016/j.molp.2021.05.026 · 2021 · External reference
Identification and characterization of long non-coding RNAs regulating resistant starch biosynthesis in bread wheat (Triticum aestivum L.)
10.1016/j.ygeno.2020.05.014 · 2020 · External reference
Identification of circular RNAs and their targets in leaves of Triticum aestivum L. under dehydration stress
10.3389/fpls.2016.02024 · 2017 · External reference
Regulatory non-coding RNAs: a new frontier in regulation of plant biology
10.1007/s10142-021-00787-8 · 2021 · External reference
Uncovering small RNA-mediated responses to cold stress in a wheat thermosensitive genic male-sterile line by deep sequencing
10.1104/pp.112.196048 · 2012 · External reference
Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.)
10.1007/s10142-010-0163-6 · 2010 · External reference
Proteomic profiling of developing wheat heads under water-stress
10.1007/s10142-020-00746-9 · 2020 · External reference
Implications of small RNAs in plant development, abiotic stress response and crop improvement in changing climate
10.1007/s13237-023-00447-1 · 2023 · External reference
Genome-wide identification and characterization of circRNAs in wheat tiller
10.1007/s00122-023-04277-2 · 2023 · External reference
Identification and characterization of circRNAs involved in the regulation of low nitrogen-promoted root growth in hexaploid wheat
10.1186/s40659-018-0194-3 · 2018 · External reference
Identification and characterization of CircRNAs involved in the regulation of wheat root length
10.1186/s40659-019-0228-5 · 2019 · External reference
Uncovering ceRNA integrated networks that associate with fertility in a photoperiod and temperature sensitive male sterile wheat line
10.1080/13102818.2021.1974315 · 2021 · External reference
Small RNA bidirectional crosstalk during the interaction between wheat and Zymoseptoria tritici
10.3389/fpls.2019.01669 · 2020 · External reference
Small RNAs target native and cross-kingdom transcripts on both sides of the wheat stripe rust interaction
10.1016/j.ygeno.2022.110526 · 2022 · External reference
Transcriptome profiles of circular rnas in common wheat during fusarium head blight disease
10.3390/data7090121 · 2022 · External reference
Identification and expressional analysis of siRNAs responsive to Fusarium graminearum infection in wheat
10.3390/ijms242116005 · 2023 · External reference
Functions of wheat ncRNAs in pathogen defense and stress adaptation
10.7717/peerj.20142 · 2025 · External reference
Biogenesis to functional significance of microRNAs under drought stress in rice: recent advances and future perspectives
10.1016/j.stress.2024.100447 · 2024 · External reference
Long noncoding RNAs as molecular architects: shaping plant functions and physiological plasticity
10.1016/j.molp.2025.09.008 · 2025 · External reference
Abiotic stress-induced circular RNAs: implications for plant stress tolerance
10.1016/j.plaphy.2025.110688 · 2025 · External reference
Molecular mechanisms of plant stress memory: roles of non-coding RNAs and alternative splicing
10.3390/plants14132021 · 2025 · External reference
Noncoding RNAs and their roles in regulating the agronomic traits of crops
10.1016/j.fmre.2023.02.020 · 2023 · External reference
A study on the functional identification of overexpressing winter wheat expansin gene TaEXPA7-B in rice under salt stress
10.3390/ijms25147707 · 2024 · External reference
Small non-coding RNAs in the regulatory network of wheat dwarf virus-infected wheat
10.3390/agriculture16010067 · 2025 · External reference
Small RNAs big impact: a review on microRNA-mediated tolerance in wheat under terminal heat
10.1007/s10142-025-01749-0 · 2025 · External reference
Drought-induced plant miRNAome and phytohormone signaling cross-talk
2023 · External reference
miR9772, a Triticum‐specific miRNA involved in regulating wheat salt tolerance and grain size
10.1111/tpj.70725 · 2026 · External reference
A long non-coding RNA lncRNA18313 regulates resistance against cadmium stress in wheat
2025 · External reference
Identifying long non-coding RNAs involved in heat stress response during wheat pollen development
10.3389/fpls.2024.1344928 · 2024 · External reference
Multifaceted regulation and functional versatility of miR164 in plant: from molecular mechanisms to crop improvement
10.1111/ppl.70548 · 2025 · External reference
Functional divergence of lncRNAs in wheat–fungal interactions: insights from stem rust-responsive wheat transcriptomes
10.1007/s12298-025-01599-x · 2025 · External reference
Multi-omics pipeline and omics-integration approach to decipher plant’s abiotic stress tolerance responses
10.3390/genes14061281 · 2023 · External reference
Beyond GMOs: the next generation of crop biotechnology
2025 · External reference
LncRNAOmics: a comprehensive review of long non-coding RNAs in plants
10.3390/genes16070765 · 2025 · External reference
MicroRNAs in plants development and stress resistance
10.1111/pce.15546 · 2025 · External reference
Genomics in wheat improvement: progress and perspectives
10.1002/tpg2.70176 · 2026 · External reference
Dissection of a rapidly evolving wheat resistance gene cluster by long-read genome sequencing accelerated the cloning of Pm69
10.1016/j.xplc.2023.100646 · 2024 · External reference
Interkingdom communication via extracellular vesicles: unraveling plant and pathogen interactions and its potential for next-generation crop protection
10.3390/microorganisms12122392 · 2024 · External reference
The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants
10.1186/s13059-022-02750-7 · 2022 · External reference
RNAseq of diverse spring wheat cultivars released during last 110 years
10.1038/s41597-023-02769-w · 2023 · External reference
Genome-wide identification of NF-Y gene family in maize (Zea mays L.) and the positive role of ZmNF-YC12 in drought resistance and recovery ability
10.3389/fpls.2023.1159955 · 2023 · External reference
Transcriptome-wide N⁶-methyladenosine (m⁶A) methylation analyses in a compatible wheat–Puccinia striiformis f. sp. tritici interaction
10.3390/plants13070982 · 2024 · External reference
Genome-wide analysis of miRNAs and their target genes in wheat cultivars with different ploidy levels under drought stress
10.1007/s00425-025-04757-3 · 2025 · External reference
The wheat stem rust resistance gene Sr43 encodes an unusual protein kinase
10.1038/s41588-023-01402-1 · 2023 · External reference
The dynamic epigenetic atlas and its effects on instability of starch and seed storage protein quality traits in wheat (Triticum aestivum L.)
2025 · External reference
The landscapes of gluten regulatory network in elite wheat cultivars contrasting in gluten strength
10.3390/ijms24119447 · 2023 · External reference
Construction of regulatory networks in plant abiotic stress responses
2023 · External reference
Dynamic atlas of histone modifications and gene regulatory networks in endosperm of bread wheat
10.1038/s41467-024-53300-7 · 2024 · External reference
Ustilago maydis disrupts carbohydrate signaling networks to induce hypertrophy in host cells
10.1038/s41467-026-69532-8 · 2026 · External reference
Characterization and functional analyses of wheat TaPR1 genes in response to stripe rust fungal infection
10.1038/s41598-023-30456-8 · 2023 · External reference
Future of durum wheat research and breeding: insights from early career researchers
10.1002/tpg2.20453 · 2025 · External reference
RNA binding by the glucocorticoid receptor attenuates dexamethasone-induced gene activation
10.1038/s41598-023-35549-y · 2023 · External reference
Overexpression of myo-inositol oxygenase (TaMIOXA) enhances the drought and high-temperature resistance of Triticum aestivum L
10.3390/ijms262210894 · 2025 · External reference
Genetic mapping and haplotype analysis identify novel candidate genes for high night temperature tolerance in winter wheat
2025 · External reference
Stage-specific transcriptomic responses of wheat to heat, drought, and combined stress: AP2/ERF regulatory networks and functional characterization of TaEREBP1-L
10.1186/s12870-025-07615-2 · 2025 · External reference
Synthetic polyploidisation enhances Fusarium graminearum tolerance in wheat by reshaping the transcriptome and strengthening the microbiome
10.1111/pbi.70295 · 2025 · External reference
RNAi technology for plant protection and its application in wheat
10.1007/s42994-021-00036-3 · 2021 · External reference
Cross-kingdom small RNA communication between plants and fungal phytopathogens-recent updates and prospects for future agriculture
10.1080/15476286.2023.2195731 · 2023 · External reference
RNAi silencing of wheat gliadins alters the network of transcription factors that regulate the synthesis of seed storage proteins toward maintaining grain protein levels
10.3389/fpls.2022.935851 · 2022 · External reference
Genetic differentiation of morphologically similar polyploid wheat species
10.7717/peerj.20723 · 2026 · External reference
Improvement of crop’s stress tolerance by gene editing CRISPR/CAS9 system
2020 · External reference
Advancing vegetable genetics with gene editing: a pathway to food security and nutritional resilience in climate-shifted environments
10.1007/s10142-025-01533-0 · 2025 · External reference
10.1002/9781394280049.ch12
10.1002/9781394280049.ch12 · External reference
10.1002/9781394280049.ch2
10.1002/9781394280049.ch2 · External reference
Dual-locking CRISPR-Cas13a/12a cascade AND-gate for simultaneous detection of lncRNA and microRNA
2026 · External reference
Improvement of wheat (Triticum spp.) through genetic manipulation
2020 · External reference
Dissecting ncRNA pathways and omics integration
10.1016/bs.pmbts.2025.01.001 · 2025 · External reference
Non-coding RNAs and their role in plants: prospective omics-tools for improving growth, development and stress tolerance in field crops
10.1007/s11033-025-10305-9 · 2025 · External reference
RNA-centric stress adaptation in plants: non-coding RNAs and AI/ML-driven insights
10.1134/s1021443725606378 · 2026 · External reference
Unlocking artificial intelligence (AI) and machine learning (ML) for smart agriculture: a basic understanding
2025 · External reference
Artificial intelligence and machine learning heuristics for discovery of ncRNAs
10.1016/bs.pmbts.2025.01.002 · 2025 · External reference
An integrated method for phenotypic analysis of wheat based on multi-view image sequences: from seedling to grain filling stages
2024 · External reference
Genome-wide identification and expression analysis of HD-ZIP gene family in sunflower (Helianthus annuus L.) under water deficit stress
10.1038/s41598-025-17883-5 · 2025 · External reference
Genetic improvement of wheat for drought tolerance: progress, challenges and opportunities
10.3390/plants11101331 · 2022 · External reference
M.B. Unlu, Differentiation of advanced generation mutant wheat lines: conventional techniques versus Raman spectroscopy
10.3389/fpls.2023.1116876 · 2023 · External reference
Nuclear factor-Y–polycomb repressive complex2 dynamically orchestrates starch and seed storage protein biosynthesis in wheat
10.1093/plcell/koae256 · 2024 · External reference
From convention to innovation: the role of genetic modification and genome editing in Australian wheat breeding
10.1093/aobpla/plaf040 · 2025 · External reference
Facts, uncertainties, and opportunities in wheat molecular improvement
10.1038/s41437-024-00721-1 · 2024 · External reference
Heterologous expression of the barley-specific HvbZIP87 transcription factor in wheat enhances broad-spectrum disease resistance with balanced yield
10.1016/j.jare.2025.05.008 · 2026 · External reference
Endoplasmic reticulum stress-responsive microRNAs are involved in the regulation of abiotic stresses in wheat
10.1007/s00299-023-03040-7 · 2023 · External reference
Gene and lncRNA expression patterns associated with Qfhs. ndsu-3AS Fusarium head blight resistance QTL in durum wheat
10.1080/07060661.2022.2091663 · 2023 · External reference
The arrangement of MicroRNAs in the regulation of drought stress response in plants: a systematic review
10.1007/s11105-023-01380-y · 2023 · External reference
ncRNAs in plant development and stress responses
10.1016/j.plaphy.2024.108950 · 2024 · External reference
Decoding plant resilience: the role of ncRNA in abiotic stress tolerance
2026 · External reference
