Research graph
References from Automated cross-session ROI tracking for multicellular calcium imaging with OPTIC. Local targets link to admitted publications; unresolved targets remain external evidence.
Two-photon calcium imaging of neuronal activity
10.1038/s43586-022-00147-1 · 2022 · External reference
A new approach for ratiometric in vivo calcium imaging of microglia
10.1038/s41598-017-05952-3 · 2017 · External reference
In vivo imaging of microglia with multiphoton microscopy
10.3389/fnagi.2018.00218 · 2018 · External reference
Long-term in vivo three-photon imaging reveals region-specific differences in healthy and regenerative oligodendrogenesis
10.1038/s41593-024-01613-7 · 2024 · External reference
Head-mounted microendoscopic calcium imaging in dorsal premotor cortex of behaving rhesus macaque
10.1016/j.celrep.2021.109239 · 2021 · External reference
Suite2p: beyond 10,000 neurons with standard two-photon microscopy
2016 · External reference
CaImAn an open source tool for scalable calcium imaging data analysis
10.7554/elife.38173 · 2019 · External reference
GraFT: Graph Filtered Temporal Dictionary Learning for Functional Neural Imaging
10.1109/tip.2022.3171414 · 2022 · External reference
Neuroscience: Big brain, big data
10.1038/541559a · 2017 · External reference
Human neuroimaging as a “Big Data” science
10.1007/s11682-013-9255-y · 2014 · External reference
A multicellular analysis calcium imaging toolbox for ImageJ.
2026 · External reference
An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics
10.1371/journal.pcbi.1005526 · 2017 · External reference
EZcalcium: Open-Source Toolbox for Analysis of Calcium Imaging Data
10.3389/fncir.2020.00025 · 2020 · External reference
FluoAnalysis: An Open-Source MATLAB Toolbox for Analysis of Calcium Imaging Measurements of Oscillatory Astrocytic and Neuronal Networks
10.3390/brainsci14080830 · 2024 · External reference
NeuroWRAP: integrating, validating, and sharing neurodata analysis workflows
10.3389/fninf.2023.1082111 · 2023 · External reference
Fast, cell-resolution, contiguous-wide two-photon imaging to reveal functional network architectures across multi-modal cortical areas
10.1016/j.neuron.2021.03.032 · 2021 · External reference
Fast volumetric calcium imaging across multiple cortical layers using sculpted light
10.1038/nmeth.4040 · 2016 · External reference
Tracking the same neurons across multiple days in Ca2+ imaging data
10.1016/j.celrep.2017.10.013 · 2017 · External reference
TrackMate: An open and extensible platform for single-particle tracking
10.1016/j.ymeth.2016.09.016 · 2017 · External reference
Time and experience differentially affect distinct aspects of hippocampal representational drift
10.1016/j.neuron.2023.05.005 · 2023 · External reference
Stimulus-dependent representational drift in primary visual cortex
10.1038/s41467-021-25436-3 · 2021 · External reference
itk-elastix: Medical image registration in Python
10.25080/gerudo-f2bc6f59-00d · 2023 · External reference
Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease
10.3389/fninf.2013.00050 · 2013 · External reference
PatchWarp: Corrections of non-uniform image distortions in two-photon calcium imaging data by patchwork affine transformations
2022 · External reference
POT Python Optimal Transport library
2021 · External reference
Accurate quantification of astrocyte and neurotransmitter fluorescence dynamics for single-cell and population-level physiology
10.1038/s41593-019-0492-2 · 2019 · External reference
Fast, accurate, and versatile data analysis platform for the quantification of molecular spatiotemporal signals
10.1016/j.cell.2025.03.012 · 2025 · External reference
Calcium imaging reveals glial involvement in transcranial direct current stimulation-induced plasticity in mouse brain
10.1038/ncomms11100 · 2016 · External reference
Cellpose3: one-click image restoration for improved cellular segmentation
10.1038/s41592-025-02595-5 · 2025 · External reference
Unresolved reference
External reference
Analysis of fractalkine receptor CX(3)CR1 function by targeted deletion and green fluorescent protein reporter gene insertion
10.1128/mcb.20.11.4106-4114.2000 · 2000 · External reference
Automatic deep learning-driven label-free image-guided patch clamp system
10.1038/s41467-021-21291-4 · 2021 · External reference
A deep learning strategy to identify cell types across species from high-density extracellular recordings
10.1016/j.cell.2025.01.041 · 2025 · External reference
Exploring network structure, dynamics, and function using NetworkX
10.25080/tcwv9851 · 2008 · External reference
Pingouin: statistics in Python
10.21105/joss.01026 · 2018 · External reference
Review of data processing of functional optical microscopy for neuroscience
10.1117/1.nph.9.4.041402 · 2022 · External reference
