Research graph
References from 3D representations of amino acids—applications to protein sequence comparison and classification. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nrm1589
10.1038/nrm1589 · External reference
Function and structure of inherently disordered proteins
10.1016/j.sbi.2008.10.002 · 2008 · External reference
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners
10.1186/1471-2164-9-s1-s1 · 2009 · External reference
A brighter future for protein structure prediction
10.1038/5794 · 1999 · External reference
10.1016/j.molcel.2005.12.005
10.1016/j.molcel.2005.12.005 · External reference
Sequence comparison and protein structure prediction
10.1016/j.sbi.2006.05.006 · 2006 · External reference
10.1016/j.sbi.2006.06.003
10.1016/j.sbi.2006.06.003 · External reference
Rigorous performance evaluation in protein structure modelling and implications for computational biology
10.1098/rstb.2005.1810 · 2006 · External reference
Advances in homology protein structure modeling
10.2174/138920306777452312 · 2006 · External reference
10.1016/j.sbi.2007.06.001
10.1016/j.sbi.2007.06.001 · External reference
10.1146/annurev.biochem.76.052705.163539
10.1146/annurev.biochem.76.052705.163539 · External reference
10.1146/annurev.biochem.77.062906.171838
10.1146/annurev.biochem.77.062906.171838 · External reference
10.1016/j.sbi.2008.02.004
10.1016/j.sbi.2008.02.004 · External reference
10.1016/j.sbi.2009.02.005
10.1016/j.sbi.2009.02.005 · External reference
Protein structure prediction from sequence variation
10.1038/nbt.2419 · 2011 · External reference
10.5936/csbj.201302010 · 2013 · Admitted local publication
10.1016/0022-2836(82)90515-0
10.1016/0022-2836(82)90515-0 · External reference
Residual colours: a proposal for aminochromography
10.1093/protein/10.7.743 · 1997 · External reference
The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
10.1093/nar/25.24.4876 · 1997 · External reference
Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis
10.1093/protein/11.10.855 · 1998 · External reference
Unresolved reference
2009 · External reference
10.6026/97320630008539
10.6026/97320630008539 · External reference
10.1007/bf01025492
10.1007/bf01025492 · External reference
Sequence physical properties encode the global organization of protein structure space
10.1073/pnas.0903433106 · 2009 · External reference
10.1073/pnas.1001299107
10.1073/pnas.1001299107 · External reference
Spectral analysis of a protein conformational switch
10.1103/physrevlett.106.248101 · 2011 · External reference
Sequence determinants of protein architecture
10.1002/prot.24328 · 2013 · External reference
Homolog detection using global sequence properties suggests an alternate view of structural encoding in protein sequences
10.1073/pnas.1403599111 · 2014 · External reference
10.1073/pnas.0408677102
10.1073/pnas.0408677102 · External reference
A vector representation for amino acid sequences
10.1016/s0092-8240(84)80063-4 · 1984 · External reference
Matrices for detecting distant relationships
1978 · External reference
10.1007/bf02460068
10.1007/bf02460068 · External reference
A new representation of protein structure: vector diagram
1986 · External reference
PHYSEAN: PHYsical SEquence ANalysis for the identification of protein domains on the basis of physical and chemical properties of amino acids
10.1093/bioinformatics/15.12.1028 · 1999 · External reference
10.1016/s1357-2725(01)00121-2
10.1016/s1357-2725(01)00121-2 · External reference
10.1142/9781860947322_0014
10.1142/9781860947322_0014 · 2005 · External reference
Novel 2-D graphical representation of proteins
10.1016/j.cplett.2005.11.091 · 2006 · External reference
On graphical and numerical representation of protein sequences
10.1080/07391102.2006.10507078 · 2006 · External reference
10.1016/j.cplett.2007.04.037
10.1016/j.cplett.2007.04.037 · External reference
On representation of proteins by star-like graphs
10.1016/j.jmgm.2006.12.006 · 2007 · External reference
Unresolved reference
2007 · External reference
Graphical representation of proteins as four-color maps and their numerical characterization
10.1016/j.jmgm.2008.10.004 · 2009 · External reference
A 2D graphical representation of protein sequence and its numerical characterization
10.1016/j.cplett.2009.06.017 · 2009 · External reference
3D graphical representation of protein sequences and their statistical characterization
10.1016/j.physa.2010.06.031 · 2010 · External reference
Representation of protein sequences on latitude-like circles and longitude-like semi-circles
10.1016/j.cplett.2010.05.039 · 2010 · External reference
2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
10.1016/j.jtbi.2010.08.007 · 2010 · External reference
The graphical representation of protein sequences based on the physicochemical properties and its applications
10.1002/jcc.21501 · 2010 · External reference
A novel graphical representation of protein sequences and its application
10.1002/jcc.21833 · 2011 · External reference
10.1016/j.jtbi.2011.09.030
10.1016/j.jtbi.2011.09.030 · External reference
Application of 2D graphic representation of protein sequence based on Huffman tree method
10.1016/j.compbiomed.2012.01.011 · 2012 · External reference
10.1016/j.jtbi.2012.11.005
10.1016/j.jtbi.2012.11.005 · External reference
10.1073/pnas.89.22.10915
10.1073/pnas.89.22.10915 · External reference
10.1016/s0969-2126(97)00260-8
10.1016/s0969-2126(97)00260-8 · External reference
Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures
10.1016/j.jmb.2004.12.032 · 2005 · External reference
The ASTRAL compendium for protein structure and sequence analysis
10.1093/nar/28.1.254 · 2000 · External reference
10.1073/pnas.85.8.2444
10.1073/pnas.85.8.2444 · External reference
10.1016/j.jmb.2008.12.044
10.1016/j.jmb.2008.12.044 · External reference
10.1016/0960-9822(93)90255-m
10.1016/0960-9822(93)90255-m · External reference
10.1107/s0567739478001680
10.1107/s0567739478001680 · External reference
10.1016/s0959-440x(00)00214-1
10.1016/s0959-440x(00)00214-1 · External reference
Unresolved reference
2005 · External reference
Unresolved reference
1970 · External reference
Amino acid substitution matrices
10.1016/s0065-3233(00)54003-0 · 2000 · External reference
Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins
10.1093/protein/9.1.27 · 1996 · External reference
10.1016/s0022-2836(05)80360-2
10.1016/s0022-2836(05)80360-2 · External reference
Protein structures sustain evolutionary drift
10.1016/s1359-0278(97)00059-x · 1997 · External reference
Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
10.1016/s0097-8485(96)80004-0 · 1996 · External reference
10.1016/0022-2836(70)90057-4
10.1016/0022-2836(70)90057-4 · External reference
A model of evolutionary changes in proteins
1978 · External reference
10.1016/s0022-2836(02)00971-3
10.1016/s0022-2836(02)00971-3 · External reference
10.1093/nar/25.17.3389
10.1093/nar/25.17.3389 · External reference
10.1016/s0959-440x(96)80056-x
10.1016/s0959-440x(96)80056-x · External reference
10.1016/0022-2836(81)90087-5
10.1016/0022-2836(81)90087-5 · External reference
