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References from News in livestock research — use of Omics -technologies to study the microbiota in the gastrointestinal tract of farm animals. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1007/s00248-006-9199-5
10.1007/s00248-006-9199-5 · External reference
10.1128/jb.180.18.4765-4774.1998
10.1128/jb.180.18.4765-4774.1998 · External reference
Molecular microbial ecology of the gastrointestinal tract: from phylogeny to function
2004 · External reference
Metagenomics — a guide from sampling to data analysis
10.1186/2042-5783-2-3 · 2012 · External reference
Analysis of plant microbe interactions in the era of next generation sequencing technologies
10.3389/fpls.2014.00216 · 2014 · External reference
10.1128/aem.00592-09
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10.5808/gi.2013.11.3.102
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The metagenomics RAST server — a public resource for the automatic phylogenetic and functional analysis of metagenomes
10.1186/1471-2105-9-386 · 2008 · External reference
Microbial community analysis using MEGAN
10.1016/b978-0-12-407863-5.00021-6 · 2013 · External reference
10.1093/nar/gkr975
10.1093/nar/gkr975 · External reference
METAREP: JCVI metagenomics reports—an open source tool for high-performance comparative metagenomics
10.1093/bioinformatics/btq455 · 2010 · External reference
10.1093/nar/gks1194
10.1093/nar/gks1194 · External reference
CAMERA: a community resource for metagenomics
10.1371/journal.pbio.0050075 · 2007 · External reference
10.1093/nar/gkm882
10.1093/nar/gkm882 · External reference
10.1093/nar/gki866
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Towards exposure of elusive metabolic mixed-culture processes: the application of metaproteomic analyses to activated sludge
10.2166/wst.2006.390 · 2006 · External reference
10.1002/pmic.201200566
10.1002/pmic.201200566 · External reference
Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities
10.1002/0471250953.bi1326s46 · 2014 · External reference
10.1016/j.jprot.2012.04.048
10.1016/j.jprot.2012.04.048 · External reference
10.1002/elps.201300017
10.1002/elps.201300017 · External reference
Characteristics of the gastrointestinal microbial communities, with special reference to the chicken
10.1079/wps20040017 · 2004 · External reference
Microbes of the avian cecum: types present and substrates utilized
10.1002/jez.1402520508 · 1989 · External reference
Studies on the cecal microflora of commercial broiler chickens
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10.1128/aem.05391-11
10.1128/aem.05391-11 · External reference
10.1128/aem.69.11.6816-6824.2003
10.1128/aem.69.11.6816-6824.2003 · External reference
16S rRNA-based analysis of microbiota from the cecum of broiler chickens
10.1128/aem.68.1.124-137.2002 · 2002 · External reference
Spatial and temporal variation of the intestinal bacterial community in commercially raised broiler chickens during growth
10.1007/s00248-002-2015-y · 2002 · External reference
Influence of antimicrobial feed additives on broiler commensal posthatch gut microbiota development and performance
10.1128/aem.02300-10 · 2011 · External reference
10.1128/aem.00165-11
10.1128/aem.00165-11 · External reference
Application of methods for identifying broiler chicken gut bacterial species linked with increased energy metabolism
10.1128/aem.01384-07 · 2008 · External reference
Influence of penicillin on microbial diversity of the cecal microbiota in broiler chickens
10.3382/ps.2012-02603 · 2013 · External reference
Ileal microbiota composition of broilers fed various commercial diet compositions
10.3382/ps.2013-03017 · 2013 · External reference
Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment
10.1371/journal.pone.0027949 · 2011 · External reference
High through put 16S rRNA gene-based pyrosequencing analysis of the fecal microbiota of high FCR and low FCR broiler growers
10.1007/s11033-012-1947-7 · 2012 · External reference
Intestinal microbiota associated with differential feed conversion efficiency in chickens
10.1007/s00253-011-3847-5 · 2012 · External reference
Highly variable microbiota development in the chicken gastrointestinal tract
10.1371/journal.pone.0084290 · 2013 · External reference
Quantitative genetic background of the host influences gut microbiomes in chickens
10.1038/srep01163 · 2013 · External reference
10.1371/journal.pone.0091941
10.1371/journal.pone.0091941 · External reference
Metaproteomics analysis reveals the adaptation process for the chicken gut microbiota
10.1128/aem.02472-13 · 2014 · External reference
Microbial community composition of the crop and ceca contents of laying hens fed diets supplemented with Chlorella vulgaris
10.3382/ps.2009-00250 · 2009 · External reference
10.1371/journal.pone.0089862
10.1371/journal.pone.0089862 · External reference
16S rRNA gene-based analysis of mucosa-associated bacterial community and phylogeny in the chicken gastrointestinal tracts: from crops to ceca
10.1111/j.1574-6941.2006.00193.x · 2007 · External reference
Retrograde movement of digesta in the duodenum of the chick: extent, frequency, and nutritional implications
10.1093/jn/108.9.1485 · 1978 · External reference
Effects of probiotic, Clostridium butyricum, on growth performance, immune function, and cecal microflora in broiler chickens
10.3382/ps.2011-02131 · 2012 · External reference
Indigenous bacteria and bacterial metabolic products in the gastrointestinal tract of broiler chickens
10.1080/17450390701556817 · 2007 · External reference
10.1007/s00253-014-5646-2
10.1007/s00253-014-5646-2 · External reference
Microflora ecology of the chicken intestine using 16S ribosomal DNA primers
10.1093/ps/83.7.1093 · 2004 · External reference
10.1371/journal.pone.0002945
10.1371/journal.pone.0002945 · External reference
Characterizing the avian gut microbiota: membership, driving influences, and potential function
10.3389/fmicb.2014.00223 · 2014 · External reference
Chicken faecal microbiota and disturbances induced by single or repeated therapy with tetracycline and streptomycin
10.1186/1746-6148-9-30 · 2013 · External reference
10.4315/0362-028x-70.12.2799
10.4315/0362-028x-70.12.2799 · External reference
Nonstarch polysaccharides modulate bacterial microbiota, pathways for butyrate production, and abundance of pathogenic Escherichia coli in the pig gastrointestinal tract
10.1128/aem.00257-10 · 2010 · External reference
Changing dietary calcium-phosphorus level and cereal source selectively alters abundance of bacteria and metabolites in the upper gastrointestinal tracts of weaned pigs
10.1128/aem.02691-13 · 2013 · External reference
10.1186/1471-2180-13-30
10.1186/1471-2180-13-30 · External reference
Early changes in microbial colonization selectively modulate intestinal enzymes, but not inducible heat shock proteins in young adult swine
10.1371/journal.pone.0087967 · 2014 · External reference
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
10.1038/ismej.2014.12 · 2014 · External reference
Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin
10.1073/pnas.1205147109 · 2012 · External reference
Comparative fecal metagenomics unveils unique functional capacity of the swine gut
10.1186/1471-2180-11-103 · 2011 · External reference
10.1371/journal.pone.0033668
10.1371/journal.pone.0033668 · External reference
Mucosa-associated bacterial microbiome of the gastrointestinal tract of weaned pigs and dynamics linked to dietary calcium–phosphorus
10.1371/journal.pone.0086950 · 2014 · External reference
Early methanogenic colonisation in the faeces of Meishan and Yorkshire piglets as determined by pyrosequencing analysis
2014 · External reference
Interaction between dietary protein content and the source of carbohydrates along the gastrointestinal tract of weaned piglets
10.1080/1745039x.2014.932962 · 2014 · External reference
Influence of fermentable carbohydrates or protein on large intestinal and urinary metabolomic profiles in piglets
10.2527/jas.53918 · 2012 · External reference
10.3945/ajcn.113.074724
10.3945/ajcn.113.074724 · External reference
Comparative nontargeted profiling of metabolic changes in tissues and biofluids in high-fat diet-fed Ossabaw pig
10.1021/pr400257d · 2013 · External reference
High-throughput sequence-based analysis of the intestinal microbiota of weanling pigs fed genetically modified MON810 maize expressing Bacillus thuringiensis Cry1Ab (Bt maize) for 31days
10.1128/aem.00307-12 · 2012 · External reference
10.1079/9780851994635.0061
10.1079/9780851994635.0061 · 2000 · External reference
Effect of phenotypic residual feed intake and dietary forage content on the rumen microbial community of beef cattle
10.1128/aem.07759-11 · 2012 · External reference
10.1126/science.1200387
10.1126/science.1200387 · External reference
Enteric fermentation and ruminant eructation: the role (and control?) of methane in the climate change debate
10.1007/s10584-008-9506-x · 2009 · External reference
10.1073/pnas.0806191105
10.1073/pnas.0806191105 · External reference
The rumen bacteria and protozoa
10.1146/annurev.mi.18.100164.001023 · 1964 · External reference
10.3168/jds.s0022-0302(81)82694-x
10.3168/jds.s0022-0302(81)82694-x · External reference
10.1128/aem.00388-10
10.1128/aem.00388-10 · External reference
16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep
10.1099/13500872-145-7-1797 · 1999 · External reference
10.1017/s1751731112000419
10.1017/s1751731112000419 · External reference
Composition and similarity of bovine rumen microbiota across individual animals
10.1371/journal.pone.0033306 · 2012 · External reference
10.1371/journal.pone.0047879
10.1371/journal.pone.0047879 · External reference
10.1371/journal.pone.0048289
10.1371/journal.pone.0048289 · External reference
10.1007/s00248-009-9609-6
10.1007/s00248-009-9609-6 · External reference
Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing
10.1111/j.1462-2920.2005.00721.x · 2005 · External reference
10.1111/j.1365-2672.2009.04376.x
10.1111/j.1365-2672.2009.04376.x · External reference
10.1186/1471-2156-13-53
10.1186/1471-2156-13-53 · External reference
Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen
10.1371/journal.pone.0038134 · 2012 · External reference
10.1128/aem.00104-12
10.1128/aem.00104-12 · External reference
Metabolomics analysis reveals large effect of roughage types on rumen microbial metabolic profile in dairy cows
10.1111/lam.12247 · 2014 · External reference
10.1371/journal.pone.0085423
10.1371/journal.pone.0085423 · External reference
The bacterial community composition of the bovine rumen detected using pyrosequencing of 16S rRNA genes
2012 · External reference
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community
10.1371/journal.pone.0008812 · 2010 · External reference
Metagenomic insights into the carbohydrate-active enzymes carried by the microorganisms adhering to solid digesta in the rumen of cows
10.1371/journal.pone.0078507 · 2013 · External reference