Research graph
References from Homology-Independent Metrics for Comparative Genomics. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nrg1659
10.1038/nrg1659 · External reference
10.1093/nar/gkm321
10.1093/nar/gkm321 · External reference
10.1093/bioinformatics/btl073
10.1093/bioinformatics/btl073 · External reference
KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa
10.1093/nar/gks490 · 2012 · External reference
Evaluating synteny for improved comparative studies
10.1093/bioinformatics/btu259 · 2014 · External reference
10.1371/journal.pgen.1000144
10.1371/journal.pgen.1000144 · External reference
10.1101/gr.5232407
10.1101/gr.5232407 · External reference
10.1101/gr.1224503
10.1101/gr.1224503 · External reference
10.1186/1471-2164-9-24
10.1186/1471-2164-9-24 · External reference
10.1186/gb-2009-10-6-r65
10.1186/gb-2009-10-6-r65 · External reference
10.1186/1471-2164-8-456
10.1186/1471-2164-8-456 · External reference
Microbial lifestyle and genome signatures
10.2174/138920212799860698 · 2012 · External reference
Pervasive properties of the genomic signature
10.1186/1471-2164-3-23 · 2002 · External reference
The reach of the genome signature in prokaryotes
10.1186/1471-2148-6-84 · 2006 · External reference
10.1371/journal.pgen.0030022
10.1371/journal.pgen.0030022 · External reference
Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals
10.1016/j.ygeno.2008.03.009 · 2008 · External reference
10.1089/08892220252779674
10.1089/08892220252779674 · External reference
10.1146/annurev.biochem.72.121801.161520
10.1146/annurev.biochem.72.121801.161520 · External reference
Codon usage and tRNA content in unicellular and multicellular organisms
1985 · External reference
Codon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe
10.1111/j.1365-2443.2009.01284.x · 2009 · External reference
10.1038/217624a0
10.1038/217624a0 · External reference
10.1073/pnas.0906412106
10.1073/pnas.0906412106 · External reference
10.1099/mic.0.26515-0
10.1099/mic.0.26515-0 · External reference
Dinucleotide relative abundance extremes: a genomic signature
10.1016/s0168-9525(00)89076-9 · 1995 · External reference
10.1038/nature01097
10.1038/nature01097 · External reference
10.1128/mmbr.00005-07
10.1128/mmbr.00005-07 · External reference
Genomic GC level, optimal growth temperature, and genome size in prokaryotes
10.1016/j.bbrc.2006.06.054 · 2006 · External reference
10.1038/sj.embor.7400538
10.1038/sj.embor.7400538 · External reference
Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes
10.1007/s00239-002-2323-3 · 2002 · External reference
Over- and under-representation of short oligonucleotides in DNA sequences
10.1073/pnas.89.4.1358 · 1992 · External reference
10.1093/nar/14.13.5125
10.1093/nar/14.13.5125 · External reference
10.1101/gr.335003
10.1101/gr.335003 · External reference
Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling
10.1186/1471-2105-4-43 · 2003 · External reference
10.1111/j.1462-2920.2004.00624.x
10.1111/j.1462-2920.2004.00624.x · External reference
Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses
10.1186/1471-2164-7-8 · 2006 · External reference
10.1016/0378-1119(90)90491-9
10.1016/0378-1119(90)90491-9 · External reference
An evaluation of measures of synonymous codon usage bias
10.1007/pl00006384 · 1998 · External reference
10.1093/oxfordjournals.molbev.a004201
10.1093/oxfordjournals.molbev.a004201 · External reference
10.1093/molbev/msp100
10.1093/molbev/msp100 · External reference
Accounting for background nucleotide composition when measuring codon usage bias: brilliant idea, difficult in practice
10.1093/molbev/msl009 · 2006 · External reference
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
10.1186/1471-2105-5-163 · 2004 · External reference
INDUS — a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences
10.1186/1471-2164-12-s3-s4 · 2011 · External reference
TWARIT: an extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences
10.1016/j.gene.2012.06.014 · 2012 · External reference
A new computational method for the detection of horizontal gene transfer events
10.1093/nar/gki187 · 2005 · External reference
Detecting horizontally transferred and essential genes based on dinucleotide relative abundance
10.1093/dnares/dsn021 · 2008 · External reference
Horizontal transfer of carbohydrate metabolism genes into ectomycorrhizal Amanita
10.1111/nph.13140 · 2014 · External reference
10.1038/nrmicro2350
10.1038/nrmicro2350 · External reference
10.1371/journal.pone.0001193
10.1371/journal.pone.0001193 · External reference
10.1093/nar/gkt673
10.1093/nar/gkt673 · External reference
10.1371/journal.pgen.1000808
10.1371/journal.pgen.1000808 · External reference
Inferring gene function from evolutionary change in signatures of translation efficiency
10.1186/gb-2014-15-3-r44 · 2014 · External reference
Virus-host coevolution: common patterns of nucleotide motif usage in Flaviviridae and their hosts
10.1371/journal.pone.0006282 · 2009 · External reference
