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References from Computational Methods for Modification of Metabolic Networks. Local targets link to admitted publications; unresolved targets remain external evidence.
Integer programming-based approach to attractor detection and control of Boolean networks
10.1587/transinf.e95.d.2960 · 2012 · External reference
10.1002/bit.10803
10.1002/bit.10803 · External reference
Computing complex metabolic intervention strategies using constrained minimal cut sets
10.1016/j.ymben.2010.12.004 · 2011 · External reference
Unresolved reference
External reference
10.1007/s10994-013-5341-z
10.1007/s10994-013-5341-z · External reference
Large-scale bi-level strain design approaches and mixed-integer programming solution techniques
2011 · External reference
Minimal cut sets in biochemical reaction networks
10.1093/bioinformatics/btg395 · 2004 · External reference
Structural and functional analysis of cellular networks with cellnetanalyzer
10.1186/1752-0509-1-2 · 2007 · External reference
Fluxanalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps
10.1093/bioinformatics/19.2.261 · 2003 · External reference
Optimization based automated curation of metabolic reconstructions
10.1186/1471-2105-8-212 · 2007 · External reference
Growmatch: an automated method for reconciling in silico/in vivo growth predictions
10.1371/journal.pcbi.1000308 · 2009 · External reference
Construction and completion of flux balance models from pathway databases
10.1093/bioinformatics/btr681 · 2012 · External reference
10.1016/j.copbio.2008.10.014
10.1016/j.copbio.2008.10.014 · External reference
Essentiality and damage in metabolic networks
10.1093/bioinformatics/btg386 · 2004 · External reference
Large-scale in silico modeling of metabolic interactions between cell types in the human brain
10.1038/nbt.1711 · 2010 · External reference
Integer programming-based method for designing synthetic metabolic networks by minimum reaction insertion in a Boolean model
2014 · External reference
Computing smallest intervention strategies for multiple metabolic networks in a Boolean model
10.1089/cmb.2014.0274 · 2015 · External reference
A comprehensive genome-scale reconstruction of escherichia coli metabolism
2011 · External reference
10.1038/nbt.1614
10.1038/nbt.1614 · External reference
10.1101/gr.2872004
10.1101/gr.2872004 · External reference
An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems
10.1016/j.ymben.2005.08.003 · 2006 · External reference
Quantitative prediction of cellular metabolism with constraint-based models: the cobra toolbox v2. 0
10.1038/nprot.2011.308 · 2011 · External reference
10.1038/73786
10.1038/73786 · External reference
10.1142/s0218339094000131
10.1142/s0218339094000131 · External reference
10.1073/pnas.232349399
10.1073/pnas.232349399 · External reference
Predicting metabolic biomarkers of human inborn errors of metabolism
10.1038/msb.2009.22 · 2009 · External reference
10.1073/pnas.0803571105
10.1073/pnas.0803571105 · External reference
Mining metabolic networks for optimal drug targets
2008 · External reference
Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets
10.4018/jkdb.2010100202 · 2010 · External reference
Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways
10.1093/bioinformatics/btp704 · 2010 · External reference
Integrating abduction and induction in biological inference using cf-induction
10.1002/9780470556757.ch9 · 2010 · External reference
Flux balance impact degree: a new definition of impact degree to properly treat reversible reactions in metabolic networks
10.1093/bioinformatics/btt364 · 2013 · External reference