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References from Knotted proteins: A tangled tale of Structural Biology. Local targets link to admitted publications; unresolved targets remain external evidence.
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A deeply knotted protein structure and how it might fold
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The folding mechanics of a knotted protein
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Dodging the crisis of folding proteins with knots
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Folding pathways of a knotted protein with a realistic atomistic force field
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The folding of knotted proteins: insights from lattice simulations
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Effects of knots on protein folding properties
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Knotting a protein in explicit solvent
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Structural and energetic determinants of co-translational folding
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Why do protein folding rates correlate with metrics of native topology?
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Thermodynamics of Go-type models for protein folding
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Robustness of atomistic Go models in predicting native-like folding intermediates
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A pH-dependent coarse-grained model for peptides
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10.1007/978-94-007-7606-7_8 · 2014 · External reference
Taming the complexity of protein folding
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Unresolved reference
2011 · External reference
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10.1073/pnas.90.11.5307
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The size of knots in polymers
10.1088/1478-3975/6/2/025012 · 2009 · External reference
Entanglement complexity of self-avoiding walks
10.1088/0305-4470/25/24/010 · 1992 · External reference
Statistics of knots, geometry of conformations, and evolution of proteins
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Efficient, multiple-range random walk algorithm to calculate the density of states
10.1103/physrevlett.86.2050 · 2001 · External reference
Sequence determines degree of knottedness in a coarse-grained protein model
10.1103/physrevlett.114.028102 · 2015 · External reference
Knotted vs unknotted proteins: evidence of knot-promoting loops
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Constrained versus unconstrained folding free-energy landscapes
2015 · External reference
The limited role of nonnative contacts in the folding pathways of a lattice protein
10.1016/j.jmb.2009.06.058 · 2009 · External reference
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How difficult is it to fold a knotted protein?In silico insights from surface-tethered folding experiments
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Energy landscape of knotted protein folding
10.1073/pnas.1201804109 · 2012 · External reference
10.1016/j.jmb.2014.09.007
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On the transition coordinate for protein folding
10.1063/1.475393 · 1998 · External reference
Exploring knotting mechanisms in protein folding
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Protein stabilization in a highly knotted protein polymer
10.1093/protein/gzr024 · 2011 · External reference
A comparison of the folding of two knotted proteins: YbeA and YibK
10.1016/j.jmb.2006.11.014 · 2007 · External reference
Folding studies on a knotted protein
10.1016/j.jmb.2004.12.055 · 2005 · External reference
Probing Nature's knots: the folding pathway of a knotted homodimeric protein
10.1016/j.jmb.2006.04.032 · 2006 · External reference
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Effect of interactions with the chaperonin cavity on protein folding and misfolding
10.1039/c3cp52872c · 2014 · External reference
Knotting pathways in proteins
10.1042/bst20120342 · 2013 · External reference
An enzyme with a deep trefoil knot for the active-site architecture
10.1107/s0907444902006601 · 2002 · External reference
Deep Knot Structure for Construction of Active Site and Cofactor Binding Site of tRNA Modification Enzyme
10.1016/j.str.2004.03.003 · 2004 · External reference
The active site of the SET domain is constructed on a knot
2002 · External reference
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Evolutionary conservation of the folding nucleus
10.1006/jmbi.2001.4602 · 2001 · External reference
