Research graph
References from Computational methods for predicting genomic islands in microbial genomes. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/35012500
10.1038/35012500 · External reference
10.1046/j.1365-2958.2003.03778.x
10.1046/j.1365-2958.2003.03778.x · External reference
Unresolved reference
2008 · External reference
10.1093/sysbio/syu007
10.1093/sysbio/syu007 · External reference
10.1038/nrmicro1204
10.1038/nrmicro1204 · External reference
10.1038/nrg3962
10.1038/nrg3962 · External reference
10.1016/0882-4010(90)90048-u
10.1016/0882-4010(90)90048-u · External reference
10.1146/annurev.micro.54.1.641
10.1146/annurev.micro.54.1.641 · External reference
10.1038/nrmicro884
10.1038/nrmicro884 · External reference
10.1111/j.1574-6976.2008.00136.x
10.1111/j.1574-6976.2008.00136.x · External reference
10.1111/1574-6976.12058
10.1111/1574-6976.12058 · External reference
10.1046/j.1365-2958.1997.3101672.x
10.1046/j.1365-2958.1997.3101672.x · External reference
10.1128/cmr.17.1.14-56.2004
10.1128/cmr.17.1.14-56.2004 · External reference
Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies
10.1093/nar/30.4.866 · 2002 · External reference
10.1101/gr.7004508
10.1101/gr.7004508 · External reference
Genomic islands are dynamic, ancient integrative elements in bacterial evolution
10.1016/j.tim.2008.11.003 · 2009 · External reference
10.1038/nrmicro2350
10.1038/nrmicro2350 · External reference
Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes
10.1093/embo-reports/kve097 · 2001 · External reference
The association of virulence factors with genomic islands
10.1371/journal.pone.0008094 · 2009 · External reference
10.1073/pnas.0915077107
10.1073/pnas.0915077107 · External reference
Identifying pathogenicity islands in bacterial pathogenomics using computational approaches
10.3390/pathogens3010036 · 2014 · External reference
10.1016/s1286-4579(00)00273-2
10.1016/s1286-4579(00)00273-2 · External reference
10.1371/journal.pcbi.1004095
10.1371/journal.pcbi.1004095 · External reference
Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities
10.1093/nar/gkh059 · 2004 · External reference
Towards pathogenomics: a web-based resource for pathogenicity islands
10.1093/nar/gkl790 · 2007 · External reference
ICEberg: a web-based resource for integrative and conjugative elements found in bacteria
10.1093/nar/gkr846 · 2012 · External reference
Evaluation of genomic island predictors using a comparative genomics approach
10.1186/1471-2105-9-329 · 2008 · External reference
PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands
10.1093/nar/gku985 · 2015 · External reference
Islander: a database of precisely mapped genomic islands in tRNA and tmRNA genes
10.1093/nar/gku1072 · 2015 · External reference
10.1016/s0378-1097(03)00204-0
10.1016/s0378-1097(03)00204-0 · External reference
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
10.1186/1471-2105-7-142 · 2006 · External reference
10.1093/bioinformatics/btl369
10.1093/bioinformatics/btl369 · External reference
Identification of compositionally distinct regions in genomes using the centroid method
10.1093/bioinformatics/btm405 · 2007 · External reference
On detection and assessment of statistical significance of Genomic Islands
10.1186/1471-2164-9-150 · 2008 · External reference
10.1007/s12038-010-0040-4
10.1007/s12038-010-0040-4 · External reference
GI-SVM: a sensitive method for predicting genomic islands based on unannotated sequence of a single genome
2016 · External reference
A systematic method to identify genomic islands and its applications in analyzing the genomes of Corynebacterium glutamicum and Vibrio vulnificus CMCP6 chromosome I
10.1093/bioinformatics/btg453 · 2004 · External reference
GC-profile: a web-based tool for visualizing and analyzing the variation of GC content in genomic sequences
10.1093/nar/gkl040 · 2006 · External reference
Identification of horizontally-transferred Genomic Islands and genome segmentation points by using the GC profile method
10.2174/1389202915999140328163125 · 2014 · External reference
Detection of genomic islands via segmental genome heterogeneity
10.1093/nar/gkp576 · 2009 · External reference
IslandPath: aiding detection of genomic islands in prokaryotes
10.1093/bioinformatics/btg004 · 2003 · External reference
Classification of genomic islands using decision trees and their ensemble algorithms
10.1186/1471-2164-11-s2-s1 · 2010 · External reference
An accurate genomic island prediction method for sequenced bacterial and archaeal genomes
2014 · External reference
A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria
10.1093/nar/gnj005 · 2006 · External reference
IslandViewer: an integrated interface for computational identification and visualization of genomic islands
10.1093/bioinformatics/btp030 · 2009 · External reference
IslandViewer update: improved genomic island discovery and visualization
10.1093/nar/gkt394 · 2013 · External reference
10.1093/nar/gkv401
10.1093/nar/gkv401 · External reference
EGID: an ensemble algorithm for improved genomic island detection in genomic sequences
10.6026/007/97320630007311 · 2011 · External reference
GIST: genomic island suite of tools for predicting genomic islands in genomic sequences
10.6026/97320630008203 · 2012 · External reference
PredictBias: a server for the identification of genomic and pathogenicity islands in prokaryotes
10.3233/isb-00352 · 2008 · External reference
10.1371/journal.pone.0030848
10.1371/journal.pone.0030848 · External reference
GI-POP: a combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects
10.1016/j.gene.2012.11.063 · 2013 · External reference
Amelioration of bacterial genomes: rates of change and exchange
10.1007/pl00006158 · 1997 · External reference
A new computational method for the detection of horizontal gene transfer events
10.1093/nar/gki187 · 2005 · External reference
10.1093/nar/gkr059
10.1093/nar/gkr059 · External reference
10.1016/s0966-842x(01)02079-0
10.1016/s0966-842x(01)02079-0 · External reference
10.1371/journal.pgen.0010062
10.1371/journal.pgen.0010062 · External reference
SIGI: score-based identification of genomic islands
10.1186/1471-2105-5-22 · 2004 · External reference
HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes
10.1093/nar/gkg004 · 2003 · External reference
10.1186/1471-2164-13-245
10.1186/1471-2164-13-245 · External reference
10.1093/nar/25.17.3389
10.1093/nar/25.17.3389 · External reference
10.1101/gr.2289704
10.1101/gr.2289704 · External reference
MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islands
10.1093/nar/gkm380 · 2007 · External reference
A computational approach for identifying pathogenicity islands in prokaryotic genomes
10.1186/1471-2105-6-184 · 2005 · External reference
Anomaly detection for discrete sequences: a survey
10.1109/tkde.2010.235 · 2012 · External reference
Estimating the extent of horizontal gene transfer in metagenomic sequences
10.1186/1471-2164-9-136 · 2008 · External reference
