Research graph
References from Scalability and Validation of Big Data Bioinformatics Software. Local targets link to admitted publications; unresolved targets remain external evidence.
Big data, big knowledge: big data for personalized healthcare
10.1109/jbhi.2015.2406883 · 2015 · External reference
Next-generation sequencing: adjusting to data overload
10.1038/nmeth0710-495 · 2010 · External reference
10.1038/nrg.2016.49
10.1038/nrg.2016.49 · External reference
10.1016/j.gpb.2016.01.005
10.1016/j.gpb.2016.01.005 · External reference
Biology: the big challenges of big data
10.1038/498255a · 2013 · External reference
Implications of Big Data for cell biology
10.1091/mbc.e13-12-0756 · 2015 · External reference
From big data analysis to personalized medicine for all: challenges and opportunities
10.1186/s12920-015-0108-y · 2015 · External reference
Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie
10.1186/1471-2105-15-s16-s15 · 2014 · External reference
Simulation-based comprehensive benchmarking of RNA-seq aligners
10.1038/nmeth.4106 · 2016 · External reference
Computing: a vision for data science
10.1038/493473a · 2013 · External reference
Data security in genomics: a review of Australian privacy requirements and their relation to cryptography in data storage
10.4103/2153-3539.175793 · 2016 · External reference
Unresolved reference
2017 · External reference
Unresolved reference
External reference
PVM: a framework for parallel distributed computing
10.1002/cpe.4330020404 · 1990 · External reference
The design, implementation, and evaluation of mpiBLAST
2003 · External reference
Multiple sequence alignment in parallel on a workstation cluster
10.1093/bioinformatics/bth055 · 2004 · External reference
10.1063/1.1461327
10.1063/1.1461327 · External reference
Unresolved reference
2005 · External reference
GridBLAST: a Globus-based high-throughput implementation of BLAST in a Grid computing framework
10.1002/cpe.906 · 2005 · External reference
myGrid: personalised bioinformatics on the information grid
10.1093/bioinformatics/btg1041 · 2003 · External reference
Squid – a simple bioinformatics grid
10.1186/1471-2105-6-197 · 2005 · External reference
Unresolved reference
2005 · External reference
Brook for GPUs: stream computing on graphics hardware
10.1145/1015706.1015800 · 2004 · External reference
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units
10.1186/1756-0500-2-73 · 2009 · External reference
Scalable parallel programming with CUDA
10.1145/1365490.1365500 · 2008 · External reference
The NIST definition of cloud computing
2011 · External reference
Unresolved reference
2017 · External reference
Unresolved reference
2017 · External reference
Unresolved reference
2017 · External reference
Unresolved reference
2017 · External reference
Unresolved reference
2017 · External reference
CloudAligner: a fast and full-featured MapReduce based tool for sequence mapping
10.1186/1756-0500-4-171 · 2011 · External reference
SparkBWA: speeding up the alignment of high-throughput DNA sequencing data
10.1371/journal.pone.0155461 · 2016 · External reference
Halvade: scalable sequence analysis with MapReduce
10.1093/bioinformatics/btv179 · 2015 · External reference
Churchill: an ultra-fast, deterministic, highly scalable and balanced parallelization strategy for the discovery of human genetic variation in clinical and population-scale genomics
10.1186/s13059-014-0577-x · 2015 · External reference
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
10.1093/bioinformatics/btt731 · 2014 · External reference
Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud
2016 · External reference
Galaxy CloudMan: delivering cloud compute clusters
10.1186/1471-2105-11-s12-s4 · 2010 · External reference
Unresolved reference
2017 · External reference
Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community
10.1186/1471-2105-13-42 · 2012 · External reference
CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing
10.1186/1471-2105-12-356 · 2011 · External reference
10.1038/nbt.3780
10.1038/nbt.3780 · External reference
Unresolved reference
2004 · External reference
Cloud-scale RNA-sequencing differential expression analysis with Myrna
2010 · External reference
Unresolved reference
2010 · External reference
VariantSpark: population scale clustering of genotype information
10.1186/s12864-015-2269-7 · 2015 · External reference
Targeted next-generation sequencing identifies pathogenic variants in familial congenital heart disease
10.1016/j.jacc.2014.09.048 · 2014 · External reference
Next-generation sequencing in clinical oncology: next steps towards clinical validation
10.3390/cancers6042296 · 2014 · External reference
Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing
10.1186/gm432 · 2013 · External reference
ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis
2011 · External reference
10.1093/nar/gku178
10.1093/nar/gku178 · External reference
10.1371/journal.pone.0011471
10.1371/journal.pone.0011471 · External reference
Comparing five statistical methods of differential methylation identification using bisulfite sequencing data
2016 · External reference
Unresolved reference
External reference
Unresolved reference
2015 · External reference
DNA sequencing with chain-terminating inhibitors
10.1073/pnas.74.12.5463 · 1977 · External reference
10.1093/bioinformatics/btr708
10.1093/bioinformatics/btr708 · External reference
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications
10.1093/bioinformatics/btu828 · 2015 · External reference
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btp352 · External reference
Unresolved reference
2011 · External reference
On testing non-testable programs
10.1093/comjnl/25.4.465 · 1982 · External reference
10.1007/s12551-015-0177-3
10.1007/s12551-015-0177-3 · External reference
Unresolved reference
1998 · External reference
Testing and validating machine learning classifiers by metamorphic testing
10.1016/j.jss.2010.11.920 · 2011 · External reference
How effectively does metamorphic testing alleviate the Oracle problem?
10.1109/tse.2013.46 · 2014 · External reference
A metamorphic relation-based approach to testing web services without oracles
10.4018/jwsr.2012010103 · 2012 · External reference
10.1109/apsec.2010.39
10.1109/apsec.2010.39 · 2010 · External reference
Automated metamorphic testing on the analyses of feature models
10.1016/j.infsof.2010.11.002 · 2011 · External reference
Unresolved reference
2002 · External reference
Unresolved reference
2016 · External reference
An innovative approach for testing bioinformatics programs using metamorphic testing
10.1186/1471-2105-10-24 · 2009 · External reference
Single-cell analysis tools for drug discovery and development
10.1038/nrd.2015.16 · 2015 · External reference
10.1038/nbt.3383
10.1038/nbt.3383 · External reference
High-throughput virtual molecular docking with AutoDockCloud: high-throughput virtual molecular docking with AutoDockCloud
10.1002/cpe.2926 · 2014 · External reference
PeakRanger: a cloud-enabled peak caller for ChIP-seq data
10.1186/1471-2105-12-139 · 2011 · External reference
