Research graph
References from Following Ribosome Footprints to Understand Translation at a Genome Wide Level. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1186/gb-2011-12-8-125 · External reference
10.1016/j.bbadis.2014.06.015
10.1016/j.bbadis.2014.06.015 · External reference
Erratum to: the real cost of sequencing: scaling computation to keep pace with data generation
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10.1093/nar/gkv1218
10.1093/nar/gkv1218 · External reference
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10.1126/science.1235122 · External reference
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10.1016/j.cell.2017.09.048 · External reference
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10.1126/science.1168978 · External reference
Polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA
10.1038/224957a0 · 1969 · External reference
10.1038/nature10965
10.1038/nature10965 · External reference
Translational contributions to tissue specificity in rhythmic and constitutive gene expression
10.1186/s13059-017-1222-2 · 2017 · External reference
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10.1126/science.1227919 · External reference
10.1038/nprot.2012.086
10.1038/nprot.2012.086 · External reference
10.1016/j.ymeth.2017.05.028
10.1016/j.ymeth.2017.05.028 · External reference
10.1016/j.cell.2011.10.002
10.1016/j.cell.2011.10.002 · External reference
10.1073/pnas.1207846109
10.1073/pnas.1207846109 · External reference
10.1093/nar/gkw822
10.1093/nar/gkw822 · External reference
Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi
10.1186/s12864-015-1563-8 · 2015 · External reference
Downregulation of the protein synthesis machinery is a major regulatory event during early adipogenic differentiation of human adipose-derived stromal cells
10.1016/j.scr.2017.10.027 · 2017 · External reference
10.1074/jbc.m111.312280
10.1074/jbc.m111.312280 · External reference
10.1016/j.ymeth.2015.07.003
10.1016/j.ymeth.2015.07.003 · External reference
10.1073/pnas.0907143106
10.1073/pnas.0907143106 · External reference
10.1016/j.cell.2008.10.028
10.1016/j.cell.2008.10.028 · External reference
Axon-TRAP-RiboTag: affinity purification of translated mRNAs from neuronal axons in mouse in vivo
1649 · External reference
10.7554/elife.01257
10.7554/elife.01257 · External reference
10.1093/bioinformatics/btt184
10.1093/bioinformatics/btt184 · External reference
10.1371/journal.pgen.1004463
10.1371/journal.pgen.1004463 · External reference
10.1016/j.celrep.2015.12.073
10.1016/j.celrep.2015.12.073 · External reference
10.1016/j.cell.2011.10.044
10.1016/j.cell.2011.10.044 · External reference
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10.2144/000114302 · External reference
10.1093/nar/gku1098
10.1093/nar/gku1098 · External reference
10.1371/journal.pgen.1004553
10.1371/journal.pgen.1004553 · External reference
10.1016/j.celrep.2015.03.014
10.1016/j.celrep.2015.03.014 · External reference
Profiling of mycoplasma gallisepticum ribosomes
10.32607/20758251-2015-7-4-107-112 · 2015 · External reference
10.1016/j.biochi.2016.10.015
10.1016/j.biochi.2016.10.015 · External reference
10.1186/s12864-016-2868-y
10.1186/s12864-016-2868-y · External reference
10.1093/nar/gkw180
10.1093/nar/gkw180 · External reference
Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo
10.1186/1471-2164-15-1115 · 2014 · External reference
10.1016/j.mib.2015.01.001
10.1016/j.mib.2015.01.001 · External reference
10.1073/pnas.1613055113
10.1073/pnas.1613055113 · External reference
10.7554/elife.01501
10.7554/elife.01501 · External reference
Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria
2014 · External reference
10.1093/nar/gkw944
10.1093/nar/gkw944 · External reference
10.1093/nar/gkt178
10.1093/nar/gkt178 · External reference
10.1371/journal.pgen.1005901
10.1371/journal.pgen.1005901 · External reference
10.1016/j.cell.2016.01.003
10.1016/j.cell.2016.01.003 · External reference
10.1186/1471-2164-16-s10-s5
10.1186/1471-2164-16-s10-s5 · External reference
Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation
10.15252/msb.20145524 · 2014 · External reference
10.1093/nar/gku646
10.1093/nar/gku646 · External reference
Measurement of average decoding rates of the 61 sense codons in vivo
10.7554/elife.03735 · 2014 · External reference
10.1093/nar/gkv199
10.1093/nar/gkv199 · External reference
10.1016/j.celrep.2014.05.023
10.1016/j.celrep.2014.05.023 · External reference
10.1016/j.cell.2014.02.006
10.1016/j.cell.2014.02.006 · External reference
10.1126/science.1215110
10.1126/science.1215110 · External reference
10.1101/gr.164996.113
10.1101/gr.164996.113 · External reference
10.1038/nature09267
10.1038/nature09267 · External reference
10.1016/s0021-9258(18)67090-5
10.1016/s0021-9258(18)67090-5 · External reference
10.7554/elife.03971
10.7554/elife.03971 · External reference
10.1371/journal.pcbi.1002755
10.1371/journal.pcbi.1002755 · External reference
Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning
10.1186/s12859-014-0380-4 · 2014 · External reference
10.1016/j.cell.2013.06.009
10.1016/j.cell.2013.06.009 · External reference
10.1016/j.celrep.2014.07.045
10.1016/j.celrep.2014.07.045 · External reference
Everything old is new again: (linc)RNAs make proteins!
10.1002/embj.201488303 · 2014 · External reference
10.1242/dev.098343
10.1242/dev.098343 · External reference
10.1016/j.yexcr.2017.10.010
10.1016/j.yexcr.2017.10.010 · External reference
10.1186/1471-2164-14-648
10.1186/1471-2164-14-648 · External reference
10.1261/rna.045286.114
10.1261/rna.045286.114 · External reference
10.1101/gr.175893.114
10.1101/gr.175893.114 · External reference
Mapping the non-standardized biases of ribosome profiling
10.1515/hsz-2015-0197 · 2016 · External reference
10.1016/j.molcel.2013.09.018
10.1016/j.molcel.2013.09.018 · External reference
10.1007/s00294-017-0698-3
10.1007/s00294-017-0698-3 · External reference
10.1016/j.cell.2014.01.021
10.1016/j.cell.2014.01.021 · External reference
10.1101/gr.193342.115
10.1101/gr.193342.115 · External reference
10.1038/nature11083
10.1038/nature11083 · External reference
10.1038/nature10912
10.1038/nature10912 · External reference
Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
10.1002/embj.201488411 · 2014 · External reference
10.7554/elife.01179
10.7554/elife.01179 · External reference
10.7554/elife.03528
10.7554/elife.03528 · External reference
10.1093/nar/gku1310
10.1093/nar/gku1310 · External reference
10.1261/rna.02890211
10.1261/rna.02890211 · External reference
10.1073/pnas.1317811111
10.1073/pnas.1317811111 · External reference
Genome-wide regulatory dynamics of translation in the plasmodium falciparum asexual blood stages
10.7554/elife.04106 · 2014 · External reference
Polysome profiling reveals translational control of gene expression in the human malaria parasite plasmodium falciparum
10.1186/gb-2013-14-11-r128 · 2013 · External reference
Extensive stage-regulation of translation revealed by ribosome profiling of Trypanosoma brucei
10.1186/1471-2164-15-911 · 2014 · External reference
10.1093/nar/gkt1386
10.1093/nar/gkt1386 · External reference
Life without transcriptional control? From fly to man and back again
10.1093/emboj/21.8.1881 · 2002 · External reference
10.1146/annurev-virology-100114-054854
10.1146/annurev-virology-100114-054854 · External reference
Temporal regulation of distinct internal ribosome entry sites of the dicistroviridae cricket paralysis virus
10.3390/v8010025 · 2016 · External reference
A systematic view on influenza induced host shutoff
10.7554/elife.18311 · 2016 · External reference
10.1038/nmeth.3208
10.1038/nmeth.3208 · External reference
10.1093/dnares/dsw008
10.1093/dnares/dsw008 · External reference
10.1038/ncomms3886
10.1038/ncomms3886 · External reference
10.1105/tpc.113.111567
10.1105/tpc.113.111567 · External reference
Dynamics of chloroplast translation during chloroplast differentiation in maize
10.1371/journal.pgen.1006106 · 2016 · External reference
Mitochondrial ribosome (Mitoribosome) profiling for monitoring mitochondrial translation in vivo
10.1002/cpmb.41 · 2017 · External reference
10.1126/science.1257522
10.1126/science.1257522 · External reference
Introduction to the special issue on local protein synthesis in axons
10.1002/dneu.22163 · 2014 · External reference
10.1111/j.1600-0854.2006.00405.x
10.1111/j.1600-0854.2006.00405.x · External reference
10.1002/dneu.22155
10.1002/dneu.22155 · External reference
10.1016/j.cell.2016.05.029
10.1016/j.cell.2016.05.029 · External reference
10.1186/s13059-016-1005-1
10.1186/s13059-016-1005-1 · External reference
10.1261/rna.052548.115
10.1261/rna.052548.115 · External reference
10.12688/f1000research.8964.1
10.12688/f1000research.8964.1 · External reference
10.1080/15476286.2016.1141862
10.1080/15476286.2016.1141862 · External reference
Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
10.1186/s12864-016-3278-x · 2016 · External reference
10.1093/bioinformatics/btw085
10.1093/bioinformatics/btw085 · External reference
10.1038/nmeth.3688
10.1038/nmeth.3688 · External reference
10.1038/nbt.3441
10.1038/nbt.3441 · External reference
10.1093/bioinformatics/btr146
10.1093/bioinformatics/btr146 · External reference
10.1093/bioinformatics/btw585
10.1093/bioinformatics/btw585 · External reference
10.1038/ncomms11194
10.1038/ncomms11194 · External reference
RiboTools: a galaxy toolbox for qualitative ribosome profiling analysis
10.1093/bioinformatics/btv174 · 2015 · External reference
10.1093/nar/gku1283
10.1093/nar/gku1283 · External reference
10.1016/j.molcel.2015.11.013
10.1016/j.molcel.2015.11.013 · External reference
tRanslatome: an R/Bioconductor package to portray translational control
10.1093/bioinformatics/btt634 · 2014 · External reference
10.1093/nar/gkx1034
10.1093/nar/gkx1034 · External reference
systemPipeR: NGS workflow and report generation environment
10.1186/s12859-016-1241-0 · 2016 · External reference
