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References from Base-pair Opening Dynamics of Nucleic Acids in Relation to Their Biological Function. Local targets link to admitted publications; unresolved targets remain external evidence.
Internal motions of transfer RNA: a study of exchanging protons by magnetic resonance
10.1080/07391102.1985.10507609 · 1985 · External reference
Studies of base pair kinetics by NMR measurement of proton exchange
10.1016/s0076-6879(95)61018-9 · 1995 · External reference
Internal motions of nucleic acid structures and the determination of base-pair lifetimes
10.1016/s0300-9084(97)86936-2 · 1997 · External reference
Proton exchange and base-pair opening kinetics in 5′-d(CGCGAATTCGCG)-3′ and related dodecamers
1990 · External reference
Effects of sequence and length on imino proton exchange and base pair opening kinetics in DNA oligonucleotide duplexes
10.1093/nar/20.20.5339 · 1992 · External reference
Kinetics and energetics of base-pair opening in 5′-d(CGCGAATTCGCG)-3′ and a substituted dodecamer containing G·T mismatches
10.1021/bi00151a005 · 1992 · External reference
NMR studies and restrained-molecular-dynamics calculations of a long a+T-rich stretch in DNA. Effects of phosphate charge and solvent approximations
10.1111/j.1432-1033.1995.832_a.x · 1995 · External reference
Base-catalysis of imino proton exchange in DNA: effects of catalyst upon DNA structure and dynamics
10.1021/bi952932z · 1996 · External reference
Imino proton exchange and base pair kinetics in the AMP-RNA aptamer complex
10.1006/jmbi.1997.0986 · 1997 · External reference
High base pair opening rates in tracts of GC base pairs
10.1074/jbc.274.11.6957 · 1999 · External reference
Imino proton exchange in DNA catalyzed by ammonia and trimethylamine: evidence for a secondary long-lived open state of the base pair
10.1021/bi991863b · 2000 · External reference
Alteration of a·T base-pair opening kinetics by the ammonium cation in DNA A-tracts
10.1021/bi020184p · 2002 · External reference
1H NMR determination of base-pair lifetimes in oligonucleotides containing single base mismatches
10.1093/nar/gkf601 · 2002 · External reference
Base-pair dynamics in an antiparallel DNA triplex measured by catalyzed imino proton exchange monitored via 1H NMR spectroscopy
10.1021/bi034479u · 2003 · External reference
Opening mechanism of G·T/U pairs in DNA and RNA duplexes: a combined study of imino proton exchange and molecular dynamics simulation
10.1021/ja0470721 · 2004 · External reference
10.1529/biophysj.105.065763
10.1529/biophysj.105.065763 · External reference
Influence of magnesium ions on spontaneous opening of DNA base pairs
10.1021/jp8005876 · 2008 · External reference
Base pair opening kinetics and dynamics in the DNA duplexes that specifically recognized by very short patch repair protein (Vsr)
10.1016/j.abb.2010.06.005 · 2010 · External reference
Dynamics of uracil and 5-fluorouracil in DNA
10.1021/bi101536k · 2011 · External reference
10.1021/ja8038272
10.1021/ja8038272 · External reference
10.1021/bi400695r
10.1021/bi400695r · External reference
10.1016/j.febslet.2009.05.015
10.1016/j.febslet.2009.05.015 · External reference
Decreased imino proton exchange and base-pair opening in the IHF-DNA complex measured by NMR
10.1006/jmbi.1999.2690 · 1999 · External reference
Unique dynamic properties of DNA duplexes containing interstrand cross-links
10.1021/bi101813h · 2011 · External reference
I-motif solution structure and dynamics of the d(AACCCC) and d(CCCCAA) tetrahymena telomeric repeats
10.1093/nar/gki160 · 2005 · External reference
Structure, internal motions and association-dissociation kinetics of the i-motif dimer of d(5mCCTCACTCC)
10.1093/nar/gki843 · 2005 · External reference
Imino proton exchange and base-pair kinetics in RNA duplexes
10.1021/bi010385d · 2001 · External reference
Thermodynamics and kinetics for base pair opening in the P1 duplex of Tetrahymena group I ribozyme
10.1093/nar/gkm184 · 2007 · External reference
Studying base pair open-close kinetics of tRNALeu by TROSY-based proton exchange NMR spectroscopy
10.1016/j.febslet.2010.10.002 · 2010 · External reference
Structural energetics and base-pair opening dynamics in sarcin-ricin domain RNA
10.1021/bi060908n · 2006 · External reference
10.1093/nar/gkw747
10.1093/nar/gkw747 · External reference
10.1016/j.bbrc.2017.01.185
10.1016/j.bbrc.2017.01.185 · External reference
10.1093/nar/gkq124
10.1093/nar/gkq124 · External reference
Mechanistic insights into temperature-dependent regulation of the simple cyanobacterial hsp17 RNA thermometer at base-pair resolution
10.1093/nar/gkv414 · 2015 · External reference
10.1016/0022-2836(84)90453-4
10.1016/0022-2836(84)90453-4 · External reference
10.1016/j.bpj.2012.03.074
10.1016/j.bpj.2012.03.074 · External reference
Unique base-pair breathing dynamics in PNA-DNA hybrids
10.1006/jmbi.1997.1153 · 1997 · External reference
10.1093/nar/gkr360
10.1093/nar/gkr360 · External reference
10.1002/cbic.201600349
10.1002/cbic.201600349 · External reference
10.1021/ja9640051
10.1021/ja9640051 · External reference
Adenine protonation in domain B of the hairpin ribozyme
10.1021/bi001976r · 2000 · External reference
Dynamics in the U6 RNA intramolecular stem-loop: a base flipping conformational change
10.1021/bi048815y · 2004 · External reference
Single-molecule mechanochemical pH sensing revealing the proximity effect of hydroniums generated by an alkaline phosphatase
10.1021/acs.analchem.7b03478 · 2018 · External reference
10.1021/jacs.8b02970
10.1021/jacs.8b02970 · External reference
Dynamic opening of DNA during the enzymatic search for a damaged base
10.1038/nsmb864 · 2004 · External reference
10.1021/ja062978n
10.1021/ja062978n · External reference
10.1038/nature06131
10.1038/nature06131 · External reference
10.1093/nar/gkp161
10.1093/nar/gkp161 · External reference
10.1021/ja211581b
10.1021/ja211581b · External reference
10.1021/ja902654u
10.1021/ja902654u · External reference
Imino proton exchange rates imply an induced-fit binding mechanism for the VEGF165-targeted aptamer, Macugen
10.1016/j.febslet.2008.05.003 · 2008 · External reference
Improved WATERGATE pulse sequences for solvent suppression in NMR spectroscopy
10.1006/jmre.1998.1405 · 1998 · External reference
10.1021/ja970160j
10.1021/ja970160j · External reference
RNA binding and chaperone activity of the E. coli cold-shock protein CspA
2017 · External reference
5-Oxyacetic acid modification destabilizes double helical stem structures and favors anionic Watson-crick like cmo5U-G base pairs
10.1002/chem.201805077 · 2018 · External reference
Measurement of hydrogen exchange times of the RNA imino protons using by phase-modulated CLEAN chemical exchange spectroscopy
10.5012/bkcs.2009.30.10.2197 · 2009 · External reference
Real-time solvent exchange studies of the imino and amino protons of yeast phenylalanine transfer RNA by Fourier transform NMR
10.1073/pnas.76.7.3130 · 1979 · External reference
NMR study of slowly exchanging imino protons in yeast tRNAasp
10.1073/pnas.80.14.4330 · 1983 · External reference
Comparison of the global structure and dynamics of native and unmodified tRNAval
10.1021/bi0473399 · 2005 · External reference
Solution structure of an unusually stable RNA tetraplex containing G- and U-quartet structures
10.1021/bi00151a003 · 1992 · External reference
10.1093/nar/gkp956
10.1093/nar/gkp956 · External reference
Hydrogen-deuterium exchange of Tetrahymena group I ribozyme
10.5012/bkcs.2007.28.10.1643 · 2007 · External reference
Recognition sequence of the dam methylase of Escherichia coli K12 and mode of cleavage of Dpn I endonuclease
10.1016/s0021-9258(17)34217-5 · 1979 · External reference
10.1016/0092-8674(94)90156-2
10.1016/0092-8674(94)90156-2 · External reference
Effects of methylation on the stability of nucleic acid conformations: studies at the monomer level
10.1021/bi00717a013 · 1974 · External reference
Methylation of the nucleobases in RNA oligonucleotides mediates duplex-hairpin conversion
10.1093/nar/29.19.3997 · 2001 · External reference
10.1021/ja513080v
10.1021/ja513080v · External reference
Insights into negative modulation of E. coli replication initiation from the structure of SeqA-hemimethylated DNA complex
2002 · External reference
Structure and dynamics of hemimethylated GATC sites: implications for DNA-SeqA recognition
10.1074/jbc.m306038200 · 2003 · External reference
(1988) the relative cytotoxicity of (6-4) photoproducts and cyclobutane dimers in mammalian cells
10.1111/j.1751-1097.1988.tb02785.x · 1988 · External reference
10.1562/2006-02-28-ir-820
10.1562/2006-02-28-ir-820 · External reference
Molecular mechanism of nucleotide excision repair
10.1101/gad.13.7.768 · 1999 · External reference
Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair
10.1016/s1097-2765(00)80132-x · 1988 · External reference
10.1101/gad.866301
10.1101/gad.866301 · External reference
NMR structure of the DNA decamer duplex containing double T·G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex
10.1093/nar/gkh568 · 2004 · External reference
10.1126/science.1085242
10.1126/science.1085242 · External reference
10.1016/j.jgg.2012.12.003
10.1016/j.jgg.2012.12.003 · External reference
10.1080/07352689.2014.917533
10.1080/07352689.2014.917533 · External reference
10.1104/pp.111.192369
10.1104/pp.111.192369 · External reference
10.1242/dev.02521
10.1242/dev.02521 · External reference
One binding-site determines sequence specificity of Tetrahymena pre-ribosomal-RNA self-splicing, transsplicing, and RNA enzyme-activity
10.1016/0092-8674(86)90443-5 · 1986 · External reference
(2002) probing the Tetrahymena group I ribozyme reaction in both directions
10.1021/bi0202631 · 2002 · External reference
10.1016/s0022-2836(03)00272-9
10.1016/s0022-2836(03)00272-9 · External reference
10.1038/nature02642
10.1038/nature02642 · External reference
10.1038/nsmb868
10.1038/nsmb868 · External reference
10.1074/jbc.271.20.11595
10.1074/jbc.271.20.11595 · External reference
10.1023/a:1003768526018
10.1023/a:1003768526018 · External reference
10.1038/nrg1115
10.1038/nrg1115 · External reference
10.1126/science.284.5421.1841
10.1126/science.284.5421.1841 · External reference
Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins
10.1038/nsb0901-761 · 2001 · External reference
10.1073/pnas.0405586101
10.1073/pnas.0405586101 · External reference
10.1093/nar/gku189
10.1093/nar/gku189 · External reference
10.1016/j.febslet.2010.10.003
10.1016/j.febslet.2010.10.003 · External reference
10.1016/j.febslet.2011.01.043
10.1016/j.febslet.2011.01.043 · External reference
10.1016/j.febslet.2010.09.036
10.1016/j.febslet.2010.09.036 · External reference
10.1093/nar/gkw025
10.1093/nar/gkw025 · External reference
10.1038/nature04088
10.1038/nature04088 · External reference
10.1016/j.bpc.2012.12.002
10.1016/j.bpc.2012.12.002 · External reference
10.1038/nrd1955
10.1038/nrd1955 · External reference
10.1038/nm0603-669
10.1038/nm0603-669 · External reference
10.1074/jbc.273.32.20556
10.1074/jbc.273.32.20556 · External reference
10.1073/pnas.0509069102
10.1073/pnas.0509069102 · External reference
10.1126/science.1962210
10.1126/science.1962210 · External reference
Peptide nucleic acids (PNA). Oligonucleotide analogs with an achiral peptide backbone
10.1021/ja00031a062 · 1992 · External reference
10.1002/asia.201100003
10.1002/asia.201100003 · External reference
