Research graph
References from Endogenous and Foreign Nucleoid-Associated Proteins of Bacteria: Occurrence, Interactions and Effects on Mobile Genetic Elements and Host's Biology. Local targets link to admitted publications; unresolved targets remain external evidence.
Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity
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10.1146/annurev-cellbio-100814-125211
10.1146/annurev-cellbio-100814-125211 · External reference
Multiple effects of Fis on integration and the control of lysogeny in phage lambda
10.1128/jb.173.13.4032-4038.1991 · 1991 · External reference
Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli
10.1128/jb.174.24.8043-8056.1992 · 1992 · External reference
10.1016/j.resmic.2011.02.003
10.1016/j.resmic.2011.02.003 · External reference
10.1371/journal.pgen.1000513
10.1371/journal.pgen.1000513 · External reference
Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from vibrio cholerae
10.1128/jb.184.15.4259-4269.2002 · 2002 · External reference
Shigella flexneri 2a strain 2457 T expresses three members of the H-NS-like protein family: characterization of the Sfh protein
2003 · External reference
Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU
10.1038/embor.2009.232 · 2010 · External reference
10.1016/s0300-9084(01)01247-0
10.1016/s0300-9084(01)01247-0 · External reference
10.1128/jb.184.18.5158-5169.2002
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10.1016/j.mib.2010.09.013
10.1016/j.mib.2010.09.013 · External reference
Simon MI (1987) Fis binding to the recombinational enhancer of the Hin DNA inversion system
10.1101/gad.1.8.762 · 1987 · External reference
10.1126/science.2932798
10.1126/science.2932798 · External reference
10.1099/mic.0.046987-0
10.1099/mic.0.046987-0 · External reference
A fundamental regulatory mechanism operating through OmpR and DNA topology controls expression of Salmonella pathogenicity islands SPI-1 and SPI-2
10.1371/journal.pgen.1002615 · 2012 · External reference
The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus
10.1128/jb.00041-10 · 2010 · External reference
10.1074/jbc.270.17.10291
10.1074/jbc.270.17.10291 · External reference
10.1073/pnas.0808215105
10.1073/pnas.0808215105 · External reference
A DNA segment encoding the anticodon stem/loop of tRNA determines the specific recombination of integrative-conjugative elements in Acidithiobacillus species
10.1080/15476286.2017.1408765 · 2018 · External reference
10.1101/gr.070276.107
10.1101/gr.070276.107 · External reference
Escherichia coli DnaA interacts with HU in initiation at the E. coli replication origin
10.1111/j.1365-2958.2007.06094.x · 2008 · External reference
10.1006/jmbi.1997.1310
10.1006/jmbi.1997.1310 · External reference
10.1128/jb.184.8.2088-2099.2002
10.1128/jb.184.8.2088-2099.2002 · External reference
10.1111/j.1365-2958.2009.06919.x
10.1111/j.1365-2958.2009.06919.x · External reference
ymoA, a Yersinia enterocolitica chromosomal gene modulating the expression of virulence functions
10.1111/j.1365-2958.1991.tb01875.x · 1991 · External reference
10.1002/cbic.201300413
10.1002/cbic.201300413 · External reference
Three-way interactions among the Sfh, StpA and H-NS nucleoid-structuring proteins of Shigella flexneri 2a strain 2457T
10.1046/j.1365-2958.2003.03515.x · 2003 · External reference
10.1038/nrmicro2261
10.1038/nrmicro2261 · External reference
Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism
10.1111/j.1365-2958.2010.07173.x · 2010 · External reference
10.1042/bst20180488
10.1042/bst20180488 · External reference
10.1371/journal.ppat.1004967
10.1371/journal.ppat.1004967 · External reference
10.1038/nrmicro1598
10.1038/nrmicro1598 · External reference
10.1111/j.1365-2958.2011.07718.x
10.1111/j.1365-2958.2011.07718.x · External reference
10.1038/nrmicro3007
10.1038/nrmicro3007 · External reference
10.1016/j.plasmid.2014.06.004
10.1016/j.plasmid.2014.06.004 · External reference
10.1111/j.1574-6976.2008.00155.x
10.1111/j.1574-6976.2008.00155.x · External reference
Chapter 2 nucleoid-associated proteins and bacterial physiology
10.1016/s0065-2164(08)01002-2 · 2009 · External reference
Regulatory hierarchies controlling virulence gene expression in Shigella flexneri and Vibrio cholerae
10.3389/fmicb.2018.02686 · 2018 · External reference
10.1016/s0966-842x(99)01455-9
10.1016/s0966-842x(99)01455-9 · External reference
10.1126/science.1137550
10.1126/science.1137550 · External reference
10.1128/mr.51.3.301-319.1987
10.1128/mr.51.3.301-319.1987 · External reference
10.1016/j.tim.2013.11.008
10.1016/j.tim.2013.11.008 · External reference
Integration host factor is required for the DNA inversion that controls phase variation in Escherichia coli
10.1073/pnas.84.18.6506 · 1987 · External reference
10.1074/jbc.m206063200
10.1074/jbc.m206063200 · External reference
IHF-dependent activation of P1 plasmid origin by dnaA
10.1111/j.1365-2958.2006.05479.x · 2006 · External reference
The type IV secretion system of ICEAfe1: formation of a conjugative pilus in Acidithiobacillus ferrooxidans
10.3389/fmicb.2019.00030 · 2019 · External reference
Temperature dependent conjugative transfer of R27: role of chromosome and plasmid encoded Hha and H-NS proteins
10.1128/jb.187.12.3950-3959.2005 · 2005 · External reference
Coupling of Escherichia coli hns mRNA levels to DNA synthesis by autoregulation: implications for growth phase control
10.1111/j.1365-2958.1995.mmi_18010101.x · 1995 · External reference
Requirement for the molecular adapter function of StpA at the Escherichia coli bgl promoter depends upon the level of truncated H-NS protein
10.1046/j.1365-2958.2001.02678.x · 2001 · External reference
The StpA protein functions as a molecular adapter to mediate repression of the bgl operon by truncated H-NS in Escherichia coli
10.1128/jb.180.4.994-997.1998 · 1998 · External reference
10.1038/nrmicro1235
10.1038/nrmicro1235 · External reference
10.1016/j.virol.2004.11.015
10.1016/j.virol.2004.11.015 · External reference
10.1007/s12038-011-9108-z
10.1007/s12038-011-9108-z · External reference
TF1, a bacteriophage-specific DNA-binding and DNA-bending protein
10.1016/1047-8477(90)90061-g · 1990 · External reference
10.1111/j.1365-2958.1995.tb02386.x
10.1111/j.1365-2958.1995.tb02386.x · External reference
10.1128/jb.00733-08
10.1128/jb.00733-08 · External reference
10.1042/bst20160190
10.1042/bst20160190 · External reference
Selective repression by Fis and H-NS at the Escherichia coli dps promoter
10.1111/j.1365-2958.2008.06253.x · 2008 · External reference
Visualizing the assembly and disassembly mechanisms of the MuB transposition targeting complex
10.1074/jbc.m311883200 · 2004 · External reference
10.21775/cimb.013.001
10.21775/cimb.013.001 · External reference
10.1126/sciadv.1600650
10.1126/sciadv.1600650 · External reference
10.1080/10409230600987415
10.1080/10409230600987415 · External reference
10.1111/j.1365-2958.2005.04799.x
10.1111/j.1365-2958.2005.04799.x · External reference
Transposable Phage Mu
10.1128/microbiolspec.mdna3-0007-2014 · 2014 · External reference
10.1128/aem.01577-07
10.1128/aem.01577-07 · External reference
Information analysis of Fis binding sites
10.1093/nar/25.24.4994 · 1997 · External reference
Unresolved reference
2005 · External reference
Bent DNA is needed for recombinational enhancer activity in the site-specific recombination system Cin of bacteriophage P1. The role of FIS protein
10.1016/0022-2836(89)90220-9 · 1989 · External reference
Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF
10.1016/s0021-9258(18)50059-4 · 1992 · External reference
10.1016/0092-8674(86)90878-0
10.1016/0092-8674(86)90878-0 · External reference
Genomic islands: tools of bacterial horizontal gene transfer and evolution
10.1111/j.1574-6976.2008.00136.x · 2009 · External reference
10.1128/jb.00252-12
10.1128/jb.00252-12 · External reference
10.1093/nar/gkq934
10.1093/nar/gkq934 · External reference
10.1093/emboj/19.23.6527
10.1093/emboj/19.23.6527 · External reference
Timely binding of IHF and Fis to DARS2 regulates ATP-DnaA production and replication initiation
10.1093/nar/gku1051 · 2014 · External reference
10.1007/s00438-003-0896-1
10.1007/s00438-003-0896-1 · External reference
A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar typhimurium
10.1099/mic.0.27209-0 · 2004 · External reference
10.3389/fmicb.2018.02019
10.3389/fmicb.2018.02019 · External reference
Amelioration of bacterial genomes: rates of change and exchange
10.1007/pl00006158 · 1997 · External reference
10.1126/science.1242059
10.1126/science.1242059 · External reference
Characterization of the nucleoid-associated protein YejK
10.1074/jbc.m113.494237 · 2013 · External reference
Unresolved reference
2017 · External reference
10.1371/journal.pone.0086618
10.1371/journal.pone.0086618 · External reference
10.1016/j.cell.2017.12.027
10.1016/j.cell.2017.12.027 · External reference
ICEberg 2.0: an updated database of bacterial integrative and conjugative elements
10.1093/nar/gky1123 · 2019 · External reference
10.1101/gad.1883510
10.1101/gad.1883510 · External reference
Gene 5.5 protein of bacteriophage T7 inhibits the nucleoid protein H-NS of Escherichia coli
10.1073/pnas.90.5.1761 · 1993 · External reference
10.1371/journal.ppat.0020081
10.1371/journal.ppat.0020081 · External reference
The novel Hha/YmoA family of nucleoid-associated proteins: use of structural mimicry to modulate the activity of the H-NS family of proteins
10.1111/j.1365-2958.2006.05497.x · 2007 · External reference
Growth phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fis P) in Escherichia coli
10.1128/jb.186.1.122-135.2004 · 2004 · External reference
Requirement for Vibrio cholerae integration host factor in conjugative DNA transfer
10.1128/jb.00564-06 · 2006 · External reference
HU and integration host factor function as auxiliary proteins in cleavage of phage lambda cohesive ends by terminase
10.1128/jb.173.5.1670-1676.1991 · 1991 · External reference
The DNA-binding protein HBsu is essential for normal growth and development in Bacillus subtilis
10.1016/0300-9084(92)90136-3 · 1992 · External reference
10.1016/0092-8674(87)90014-6
10.1016/0092-8674(87)90014-6 · External reference
Role of histone-like proteins H-NS and StpA in expression of virulence determinants of uropathogenic Escherichia coli
10.1128/jb.01956-05 · 2006 · External reference
10.1111/j.1365-2958.2009.06995.x
10.1111/j.1365-2958.2009.06995.x · External reference
10.1038/sj.emboj.7601325
10.1038/sj.emboj.7601325 · External reference
Overproduction of Escherichia coli integration host factor, a protein with nonidentical subunits
10.1128/jb.169.9.4124-4127.1987 · 1987 · External reference
10.1101/gad.1543107
10.1101/gad.1543107 · External reference
10.1126/science.1128794
10.1126/science.1128794 · External reference
The putative Orf4 of broad-host-range conjugative plasmid R446 could be related to the H-NS family of bacterial nucleoid-associated proteins
10.1006/plas.1998.1388 · 1999 · External reference
Evidence for direct protein– protein interaction between members of the enterobacterial Hha/YmoA and H-NS families of proteins
10.1128/jb.184.3.629-635.2002 · 2002 · External reference
The role of FIS in trans activation of stable RNA operons of E. coli
10.1002/j.1460-2075.1990.tb08166.x · 1990 · External reference
10.1271/bbb.110620
10.1271/bbb.110620 · External reference
10.1128/jb.178.1.293-297.1996
10.1128/jb.178.1.293-297.1996 · External reference
10.1371/journal.pone.0019172
10.1371/journal.pone.0019172 · External reference
Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts
10.1006/jmbi.1996.0669 · 1996 · External reference
10.1016/j.plasmid.2013.01.006
10.1016/j.plasmid.2013.01.006 · External reference
10.1111/j.1365-2958.2004.04268.x
10.1111/j.1365-2958.2004.04268.x · External reference
10.1016/j.compbiolchem.2015.06.007
10.1016/j.compbiolchem.2015.06.007 · External reference
Silencing of cryptic prophages in Corynebacterium glutamicum
2016 · External reference
10.1016/j.mib.2011.07.027
10.1016/j.mib.2011.07.027 · External reference
Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12
10.1093/nar/gkr1236 · 2011 · External reference
Unresolved reference
2019 · External reference
Structure of the histone-like protein H-NS and its role in regulation and genome superstructure
10.1016/j.mib.2004.02.001 · 2004 · External reference
Pervasive regulation of nucleoid structure and function by nucleoid-associated proteins
10.1016/j.mib.2011.01.003 · 2011 · External reference
A molecular mechanism for the repression of transcription by the H-NS protein
10.1046/j.1365-2958.2001.02706.x · 2001 · External reference
10.1128/jb.02198-14
10.1128/jb.02198-14 · External reference
E. coli DNA binding protein HU forms nucleosomelike structure with circular double-stranded DNA
10.1016/0092-8674(79)90152-1 · 1979 · External reference
10.1371/journal.pgen.1003902
10.1371/journal.pgen.1003902 · External reference
The small nucleoid-binding proteins H-NS, HU, and Fis affect hilA expression in Salmonella enterica serovar typhimurium
10.1128/iai.71.9.5432-5435.2003 · 2003 · External reference
The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA
10.1046/j.1365-2958.2000.02129.x · 2000 · External reference
Fine-tuned growth phase control of dps, encoding a DNA protection protein, by FIS and H-NS
10.1111/j.1365-2958.2008.06266.x · 2008 · External reference
10.1073/pnas.1413019111
10.1073/pnas.1413019111 · External reference
Genetic and biochemical interactions between the bacterial replication initiator DnaA and the nucleoid-associated protein Rok in Bacillus subtilis
10.1111/mmi.13590 · 2017 · External reference
The positive and negative regulation of Tn10 transposition by IHF is mediated by structurally asymmetric transposon arms
10.1093/nar/gkg797 · 2003 · External reference
10.1016/j.plasmid.2015.04.008
10.1016/j.plasmid.2015.04.008 · External reference
The behavior of mobile genetic elements (MGEs) in different environments
10.1080/09168451.2016.1270743 · 2017 · External reference
Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1
10.1111/j.1462-2920.2009.02110.x · 2009 · External reference
Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation
10.1128/aem.72.5.3206-3216.2006 · 2006 · External reference
10.1128/jb.00002-07
10.1128/jb.00002-07 · External reference
10.1146/annurev-micro-102215-095301
10.1146/annurev-micro-102215-095301 · External reference
The nucleoid binding protein H-NS acts as an anti-channeling factor to favor intermolecular Tn10 transposition and dissemination
10.1016/j.jmb.2007.12.035 · 2008 · External reference
10.1371/journal.pgen.1001207
10.1371/journal.pgen.1001207 · External reference
Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle
10.1073/pnas.1108229109 · 2012 · External reference
10.1038/nrg3962
10.1038/nrg3962 · External reference
10.1101/gad.1900610
10.1101/gad.1900610 · External reference
10.1099/mic.0.2008/020693-0
10.1099/mic.0.2008/020693-0 · External reference
10.1073/pnas.95.9.5145
10.1073/pnas.95.9.5145 · External reference
Growth phase-dependent expression profiles of three vital H-NS family proteins encoded on the chromosome of Pseudomonas putida KT2440 and on the pCAR1 plasmid
2017 · External reference
10.1080/09168451.2018.1484277
10.1080/09168451.2018.1484277 · External reference
10.1128/aem.00023-15
10.1128/aem.00023-15 · External reference
10.1016/j.sbi.2003.12.003
10.1016/j.sbi.2003.12.003 · External reference
10.1111/j.1365-2958.2004.04051.x
10.1111/j.1365-2958.2004.04051.x · External reference
Distribution of genes encoding nucleoid-associated protein homologs in plasmids
10.4061/2011/685015 · 2011 · External reference
10.1128/jvi.02261-12
10.1128/jvi.02261-12 · External reference
A novel nucleoid-associated protein coordinates chromosome replication and chromosome partition
10.1093/nar/gkx596 · 2017 · External reference
10.1038/nrmicro1234
10.1038/nrmicro1234 · External reference
Bacterial chromatin
10.1016/j.gde.2005.08.006 · 2005 · External reference
10.1038/nrmicro1088
10.1038/nrmicro1088 · External reference
10.1038/ncomms14665
10.1038/ncomms14665 · External reference
Autoregulatory expression of the Escherichia coli hns gene encoding a nucleoid protein: H-NS functions as a repressor of its own transcription
10.1007/bf00277109 · 1993 · External reference
10.1016/s0300-9084(00)01225-6
10.1016/s0300-9084(00)01225-6 · External reference
Compositional discordance between prokaryotic plasmids and host chromosomes
10.1186/1471-2164-7-26 · 2006 · External reference
10.1111/1758-2229.12639
10.1111/1758-2229.12639 · External reference
10.1371/journal.pone.0064688
10.1371/journal.pone.0064688 · External reference
10.1099/mic.0.053702-0
10.1099/mic.0.053702-0 · External reference
10.1093/nar/gkp672
10.1093/nar/gkp672 · External reference
10.1128/jb.174.14.4530-4537.1992
10.1128/jb.174.14.4530-4537.1992 · External reference
Differential regulation of Escherichia coli topoisomerase I by Fis
10.1111/j.1365-2958.2006.05569.x · 2007 · External reference
The global bacterial regulator H-NS promotes transpososome formation and transposition in the Tn5 system
10.1093/nar/gkn935 · 2008 · External reference
10.1111/j.1365-2958.2004.04421.x
10.1111/j.1365-2958.2004.04421.x · External reference
10.1038/nrmicro2382
10.1038/nrmicro2382 · External reference
Function of IHF in lambda DNA packaging. I Identification of the strong binding site for integration host factor and the locus for intrinsic bending in cosB
1993 · External reference
Molecular analysis of the Escherichia coli has gene encoding a DNA-binding protein, which preferentially recognizes curved DNA sequences
10.1007/bf00290685 · 1991 · External reference
Histone-like proteins are required for cell growth and constraint of supercoils in DNA
10.1016/0378-1119(92)90026-l · 1992 · External reference
10.1128/jb.00591-10
10.1128/jb.00591-10 · External reference
MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome regulate the host transcriptome cooperatively but differently
10.1128/aem.03071-15 · 2015 · External reference
Mutations in HU and IHF affect bacteriophage T4 growth: HimD subunits of IHF appear to function as homodimers
10.1016/0378-1119(95)00252-2 · 1995 · External reference
Borrelia burgdorferi EbfC defines a newly-identified, widespread family of bacterial DNA-binding proteins
10.1093/nar/gkp027 · 2009 · External reference
The role of H-NS in silencing F transfer gene expression during entry into stationary phase
10.1111/j.1365-2958.2004.04303.x · 2004 · External reference
10.1093/nar/gky387
10.1093/nar/gky387 · External reference
D.J. Jinet al., Nucleoid proteins stimulate stringently controlled bacterial promoters: a link between the cAMP-CRP and the (p)ppGpp regulons in Escherichia coli
10.1016/s0092-8674(00)00052-0 · 2000 · External reference
The HimA and HimD subunits of integration host factor can specifically bind to DNA as homodimers
10.1002/j.1460-2075.1994.tb06415.x · 1994 · External reference
10.3184/003685016x14811202974921
10.3184/003685016x14811202974921 · External reference
10.1111/1462-2920.12515
10.1111/1462-2920.12515 · External reference
10.1046/j.1365-2958.2003.03848.x
10.1046/j.1365-2958.2003.03848.x · External reference
10.1111/j.1365-2958.2007.05950.x
10.1111/j.1365-2958.2007.05950.x · External reference
10.1074/jbc.m414544200
10.1074/jbc.m414544200 · External reference
10.1016/j.mib.2014.10.005
10.1016/j.mib.2014.10.005 · External reference
10.1111/j.1365-2958.2004.04162.x
10.1111/j.1365-2958.2004.04162.x · External reference
