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References from DNA Supercoiling: an Ancestral Regulator of Gene Expression in Pathogenic Bacteria?. Local targets link to admitted publications; unresolved targets remain external evidence.
Genome scale patterns of supercoiling in a bacterial chromosome
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The structure of DNA
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Identification of DNA topoisomerases involved in immediate and transient DNA relaxation induced by heat shock in Escherichia coli
10.1007/bf00583895 · 1994 · External reference
Thermoregulation in Yersinia enterocolitica is coincident with changes in DNA supercoiling
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Changes in DNA supertwist as a response of Bacillus subtilis towards different kinds of stress
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Increase in negative supercoiling of plasmid DNA in Escherichia coli exposed to cold shock
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The influence of DNA topology on the environmental regulation of a pH-regulated locus in Salmonella typhimurium
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Bacterial regulon evolution: distinct responses and roles for the identical OmpR proteins of Salmonella Typhimurium and Escherichia coli in the acid stress response
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Negative supercoiling of DNA by gyrase is inhibited in Salmonella enterica serovar Typhimurium during adaptation to acid stress
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Chromosomal “stress-response” domains govern the spatiotemporal expression of the bacterial virulence program
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Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis
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Bacterial DNA supercoiling and [ATP]/[ADP]. Changes associated with a transition to anaerobic growth
1991 · External reference
DNA supercoiling is differentially regulated by environmental factors and FIS in Escherichia coli and Salmonella enterica
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Genomic analysis of the regulatory elements and links with intrinsic DNA structural properties in the shrunken genome of Buchnera
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Analysis of pleiotropic transcriptional profiles: a case study of DNA Gyrase inhibition
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10.1101/gr.401003
10.1101/gr.401003 · External reference
Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome
10.1038/sj.embor.7400729 · 2006 · External reference
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
10.1186/gb-2004-5-11-r87 · 2004 · External reference
Clinically relevant mutant DNA gyrase alters supercoiling, changes the transcriptome, and confers multidrug resistance
10.1128/mbio.00273-13 · 2013 · External reference
Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling
10.1093/nar/gkz300 · 2019 · External reference
10.1101/gr.157701
10.1101/gr.157701 · External reference
The genome of Streptococcus pneumoniae is organized in topology-reacting gene clusters
10.1093/nar/gkq106 · 2010 · External reference
An increase in negative supercoiling in bacteria reveals topology-reacting gene clusters and a homeostatic response mediated by the DNA topoisomerase I gene
2016 · External reference
Altering gene expression by aminocoumarins: the role of DNA supercoiling in Staphylococcus aureus
10.1186/1471-2164-15-291 · 2014 · External reference
Transcriptional responses of Bacillus subtillis and thuringiensis to antibiotics and anti-tumour drugs
2009 · External reference
Transcriptional response of Streptomyces coelicolor to rapid chromosome relaxation or long-term supercoiling imbalance
2019 · External reference
10.1074/jbc.m406796200
10.1074/jbc.m406796200 · External reference
DNA supercoiling regulates the stress-inducible expression of genes in the cyanobacterium Synechocystis
10.1039/b903022k · 2009 · External reference
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Dissecting the logical types of network control in gene expression profiles
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Temperature dependence of the DNA double helix at the nanoscale: structure, elasticity, and fluctuations
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10.1093/nar/gkt308
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Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA
10.1093/bioinformatics/btt415 · 2013 · External reference
DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation
10.1093/nar/gkp1084 · 2010 · External reference
Promoter sequence for stringent control of bacterial ribonucleic acid synthesis
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Mechanism of transcription initiation and promoter escape by E. coli RNA polymerase
10.1073/pnas.1618675114 · 2017 · External reference
Effect of supercoiling on the abortive initiation kinetics of the RNA-I promoter of ColE1 plasmid DNA
10.1016/s0021-9258(18)90844-6 · 1984 · External reference
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10.1016/0092-8674(83)90140-x
10.1016/0092-8674(83)90140-x · External reference
Inhibition of the gyrA promoter by transcription-coupled DNA supercoiling in Escherichia coli
10.1038/s41598-018-33089-4 · 2018 · External reference
Regulation of the gyr operon of mycobacterium tuberculosis by overlapping promoters, DNA topology, and reiterative transcription
10.1016/j.bbrc.2018.05.067 · 2018 · External reference
Integration of two essential virulence modulating signals at the Erwinia chrysanthemi pel gene promoters: a role for Fis in the growth-phase regulation
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10.1111/j.1365-2958.1992.tb01358.x
10.1111/j.1365-2958.1992.tb01358.x · External reference
Axial distortion as a sensor of supercoil changes: a molecular model for the homeostatic regulation of DNA gyrase
10.1007/bf02717907 · 2001 · External reference
10.1126/science.1235441
10.1126/science.1235441 · External reference
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10.1093/nar/gky382 · External reference
10.1111/1462-2920.13838
10.1111/1462-2920.13838 · External reference
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Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature
10.1073/pnas.81.13.4046 · 1984 · External reference
10.1093/nar/28.8.1838
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PecS is a global regulator of the symptomatic phase in the phytopathogenic bacterium Erwinia chrysanthemi 3937
10.1128/jb.00553-08 · 2008 · External reference
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Site-specific insertion and deletion mutants in the mer promoter-operator region of Tn501; the nineteen base-pair spacer is essential for normal induction of the promoter by MerR
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General transfer matrix formalism to calculate DNA–protein–drug binding in gene regulation: application to OR operator of phage λ
10.1093/nar/gkm268 · 2007 · External reference
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A fundamental regulatory mechanism operating through OmpR and DNA topology controls expression of Salmonella pathogenicity Islands SPI-1 and SPI-2
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Supercoiling of the DNA template during transcription
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Stochastic model of supercoiling-dependent transcription
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Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes
10.1093/nar/gkw007 · 2016 · External reference
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DNA supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvYC operon of Escherichia coli is proportional to promoter strengths and transcript lengths
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A promoter relay mechanism for sequential gene activation
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