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References from Concepts in Boolean network modeling: What do they all mean?. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nature01254
10.1038/nature01254 · External reference
10.1038/nrg2957
10.1038/nrg2957 · External reference
10.1016/j.tibs.2011.03.006
10.1016/j.tibs.2011.03.006 · External reference
10.18632/oncotarget.14009
10.18632/oncotarget.14009 · External reference
10.1126/science.1069492
10.1126/science.1069492 · External reference
10.1140/epjnbp/s40366-016-0031-y
10.1140/epjnbp/s40366-016-0031-y · External reference
10.1038/nrm2503
10.1038/nrm2503 · External reference
10.1016/0022-5193(69)90015-0
10.1016/0022-5193(69)90015-0 · External reference
10.1016/0022-5193(73)90247-6
10.1016/0022-5193(73)90247-6 · External reference
A Boolean model of the cardiac gene regulatory network determining first and second heart field identity
10.1371/journal.pone.0046798 · 2012 · External reference
10.1371/journal.pone.0195126
10.1371/journal.pone.0195126 · External reference
10.1016/j.canlet.2015.11.025
10.1016/j.canlet.2015.11.025 · External reference
10.1371/journal.pcbi.1005741
10.1371/journal.pcbi.1005741 · External reference
10.1093/bioinformatics/btv013
10.1093/bioinformatics/btv013 · External reference
10.1186/1751-0473-3-16
10.1186/1751-0473-3-16 · External reference
10.1007/s00180-012-0324-2
10.1007/s00180-012-0324-2 · External reference
10.1089/10665270252833208
10.1089/10665270252833208 · External reference
The logical analysis of continuous, non-linear biochemical control networks
10.1016/0022-5193(73)90208-7 · 1973 · External reference
Disturbance decoupling of Boolean control networks
10.1109/tac.2010.2050161 · 2010 · External reference
10.1093/oso/9780195079517.001.0001
10.1093/oso/9780195079517.001.0001 · External reference
10.1016/j.ymeth.2012.10.012
10.1016/j.ymeth.2012.10.012 · External reference
10.1093/bioinformatics/btn336
10.1093/bioinformatics/btn336 · External reference
10.1016/j.jtbi.2010.07.022
10.1016/j.jtbi.2010.07.022 · External reference
10.1103/physreve.72.055101
10.1103/physreve.72.055101 · External reference
Boolean network models of cellular regulation: prospects and limitations
10.1098/rsif.2008.0132.focus · 2008 · External reference
10.1126/science.1113834
10.1126/science.1113834 · External reference
10.1093/bioinformatics/btw661
10.1093/bioinformatics/btw661 · External reference
Sanctions and civil conflict
10.1111/1468-0335.00278 · 2002 · External reference
Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks
10.1093/bioinformatics/18.2.261 · 2002 · External reference
10.1371/journal.pone.0131832
10.1371/journal.pone.0131832 · External reference
10.1371/journal.pcbi.0040023
10.1371/journal.pcbi.0040023 · External reference
Guiding the self-organization of random Boolean networks
10.1007/s12064-011-0144-x · 2012 · External reference
10.1016/s0167-2789(03)00174-x
10.1016/s0167-2789(03)00174-x · External reference
10.1242/jcs.02714
10.1242/jcs.02714 · External reference
10.1103/physreve.67.026112
10.1103/physreve.67.026112 · External reference
10.1038/35036627
10.1038/35036627 · External reference
From topology to dynamics in biochemical networks
10.1063/1.1414882 · 2001 · External reference
10.1016/j.jtbi.2010.08.006
10.1016/j.jtbi.2010.08.006 · External reference
10.1038/scientificamerican0503-60
10.1038/scientificamerican0503-60 · External reference
10.1093/bioinformatics/btr166
10.1093/bioinformatics/btr166 · External reference
10.1007/s00180-012-0385-2
10.1007/s00180-012-0385-2 · External reference
The effect of negative feedback loops on the dynamics of Boolean networks
10.1529/biophysj.107.125021 · 2008 · External reference
10.1073/pnas.0407783101
10.1073/pnas.0407783101 · External reference
Inferring biologically relevant models: nested analyzing functions
2012 · External reference
Boolean networks with biologically relevant rules show ordered behavior
10.1016/j.biosystems.2006.06.007 · 2007 · External reference
10.1002/cplx.10022
10.1002/cplx.10022 · External reference
10.1038/150563a0
10.1038/150563a0 · External reference
10.1073/pnas.2036429100
10.1073/pnas.2036429100 · External reference
Evaluating the impact of foreign aid on economic growth: a cross-country study
2005 · External reference
10.1002/ece3.4488
10.1002/ece3.4488 · External reference
Regulatory networks seen as asynchronous automata: a logical description
10.1016/s0022-5193(05)80350-9 · 1991 · External reference
Unresolved reference
1997 · External reference
Steady-state probabilities for attractors in probabilistic Boolean networks
10.1016/j.sigpro.2005.02.016 · 2005 · External reference
Gene expression profiling, genetic networks, and cellular states: an integrating concept for tumorigenesis and drug discovery
10.1007/s001099900023 · 1999 · External reference
Basins of attraction, commitment sets and phenotypes of Boolean networks
2018 · External reference
Basin entropy in Boolean network ensembles
10.1103/physrevlett.98.158701 · 2007 · External reference
Mutual information in random Boolean models of regulatory networks
10.1103/physreve.77.011901 · 2008 · External reference
Measures for information propagation in Boolean networks
10.1016/j.physd.2006.12.005 · 2007 · External reference
Reveal, a general reverse engineering algorithm for inference of genetic network architectures
1998 · External reference
Canalizing Boolean functions maximize mutual information
10.1109/tit.2014.2304952 · 2014 · External reference
10.1016/s0022-5193(03)00035-3
10.1016/s0022-5193(03)00035-3 · External reference
10.1109/tcbb.2011.62
10.1109/tcbb.2011.62 · External reference
10.1093/bioinformatics/btv591
10.1093/bioinformatics/btv591 · External reference
10.1023/a:1023905711304
10.1023/a:1023905711304 · External reference
Unresolved reference
2004 · External reference
10.1002/9783527626359.ch3
10.1002/9783527626359.ch3 · 2008 · External reference
10.1073/pnas.0506771102
10.1073/pnas.0506771102 · External reference
10.1016/j.jtbi.2003.10.018
10.1016/j.jtbi.2003.10.018 · External reference
(2018) Dynamical Criticality in Gene Regulatory Networks
2018 · External reference
Why a simple model of genetic regulatory networks describes the distribution of avalanches in gene expression data
10.1016/j.jtbi.2007.01.012 · 2007 · External reference
10.1016/j.jtbi.2006.02.011
10.1016/j.jtbi.2006.02.011 · External reference
Unresolved reference
2009 · External reference
10.1089/cmb.2010.0224
10.1089/cmb.2010.0224 · External reference
Understanding genetic regulatory networks
10.1017/s147355040300154x · 2003 · External reference
10.1016/j.physa.2004.05.018
10.1016/j.physa.2004.05.018 · External reference
10.1016/j.jtbi.2003.12.017
10.1016/j.jtbi.2003.12.017 · External reference
Stability of signaling pathways during aging-A Boolean network approach
2017 · External reference
10.1007/978-1-60327-563-7_10
10.1007/978-1-60327-563-7_10 · 2009 · External reference
10.1371/journal.pone.0022649
10.1371/journal.pone.0022649 · External reference
10.1088/1478-3975/9/5/055001
10.1088/1478-3975/9/5/055001 · External reference
Unresolved reference
2011 · External reference
A system for identifying genetic networks from gene expression patterns produced by gene disruptions and overexpressions
1998 · External reference
Determining a singleton attractor of an AND/OR Boolean network in O(1.587n) time
10.1016/j.ipl.2010.05.001 · 2010 · External reference
A SAT-based algorithm for finding attractors in synchronous Boolean networks
10.1109/tcbb.2010.20 · 2011 · External reference
10.1093/bioinformatics/btq124
10.1093/bioinformatics/btq124 · External reference
Unresolved reference
2009 · External reference
A survey on semi-tensor product of matrices
10.1007/s11424-007-9027-0 · 2007 · External reference
Regularized negative correlation learning for neural network ensembles
10.1109/tnn.2009.2034144 · 2009 · External reference
Survey on semi-tensor product method with its applications in logical networks and other finite-valued systems
10.1049/iet-cta.2016.1659 · 2017 · External reference
ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists
10.1186/1752-0509-3-58 · 2009 · External reference
10.3389/fphys.2018.00431
10.3389/fphys.2018.00431 · External reference
SimBoolNet—a Cytoscape plugin for dynamic simulation of signaling networks
10.1093/bioinformatics/btp617 · 2010 · External reference
GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks
10.1016/j.biosystems.2005.10.003 · 2006 · External reference
Structural and functional analysis of cellular networks with Cell NetAnalyzer
10.1186/1752-0509-1-2 · 2007 · External reference
Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm
10.1186/1752-0509-6-116 · 2012 · External reference
Unresolved reference
2017 · External reference
10.1186/1752-0509-6-96
10.1186/1752-0509-6-96 · External reference
CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms
10.1186/1752-0509-6-133 · 2012 · External reference
Parameter estimation for Boolean models of biological networks
10.1016/j.tcs.2010.04.034 · 2011 · External reference
Dynamic simulation of regulatory networks using SQUAD
10.1186/1471-2105-8-462 · 2007 · External reference
10.1093/bioinformatics/btw682
10.1093/bioinformatics/btw682 · External reference
10.2174/138920209789208237
10.2174/138920209789208237 · External reference
Noisy attractors and ergodic sets in models of gene regulatory networks
10.1016/j.jtbi.2007.04.020 · 2007 · External reference
On the dynamics of random Boolean networks subject to noise: attractors, ergodic sets and cell types
10.1016/j.jtbi.2010.04.012 · 2010 · External reference
10.1371/journal.pone.0017703
10.1371/journal.pone.0017703 · External reference
Unresolved reference
2016 · External reference
Unresolved reference
2005 · External reference
The impact of function perturbations in Boolean networks
10.1093/bioinformatics/btm093 · 2007 · External reference
Unresolved reference
1995 · External reference
Unresolved reference
1988 · External reference
Extended critical situations: the physical singularity of life phenomena
10.1142/s0218339008002514 · 2008 · External reference
Computation at the edge of chaos: phase transitions and emergent computation
10.1016/0167-2789(90)90064-v · 1990 · External reference
Unresolved reference
1990 · External reference
10.1016/j.jtbi.2006.10.027
10.1016/j.jtbi.2006.10.027 · External reference
Random networks of automata: a simple annealed approximation
10.1209/0295-5075/1/2/001 · 1986 · External reference
The random map model: a disordered model with deterministic dynamics
10.1051/jphys:01987004806097100 · 1987 · External reference
10.1007/978-0-387-21789-5_2
10.1007/978-0-387-21789-5_2 · 2003 · External reference
Damage spreading and Lyapunov exponents in cellular automata
10.1016/0375-9601(92)90185-o · 1992 · External reference
Lyapunov exponents in random Boolean networks
10.1016/s0378-4371(00)00184-9 · 2000 · External reference
10.1103/physrevlett.93.048701
10.1103/physrevlett.93.048701 · External reference
Noise in random Boolean networks
10.1103/physreve.79.036108 · 2009 · External reference
Perturbation propagation in random and evolved Boolean networks
10.1088/1367-2630/11/3/033005 · 2009 · External reference
10.1016/j.cell.2011.02.013
10.1016/j.cell.2011.02.013 · External reference
10.1371/journal.pcbi.1000595
10.1371/journal.pcbi.1000595 · External reference
10.1371/journal.pone.0018646
10.1371/journal.pone.0018646 · External reference
10.1371/journal.pcbi.1002267
10.1371/journal.pcbi.1002267 · External reference
10.1073/pnas.0806447105
10.1073/pnas.0806447105 · External reference
Dynamics of p53 and NF-κB regulation in response to DNA damage and identification of target proteins suitable for therapeutic intervention
10.1186/1752-0509-6-125 · 2012 · External reference
10.1371/journal.pcbi.1003286
10.1371/journal.pcbi.1003286 · External reference
10.1371/journal.pone.0069008
10.1371/journal.pone.0069008 · External reference
Boolean ErbB network reconstructions and perturbation simulations reveal individual drug response in different breast cancer cell lines
10.1186/1752-0509-8-75 · 2014 · External reference
10.1038/nbt.2284
10.1038/nbt.2284 · External reference
10.1038/nbt.2345
10.1038/nbt.2345 · External reference
10.1038/nbt.1549
10.1038/nbt.1549 · External reference
10.7554/elife.00747
10.7554/elife.00747 · External reference
10.1371/journal.pcbi.1004426
10.1371/journal.pcbi.1004426 · External reference
Beyond reductionism
10.1126/science.284.5411.79 · 1999 · External reference
10.1038/nrg1272
10.1038/nrg1272 · External reference
Genetics. Getting closer to the whole picture
10.1126/science.1142502 · 2007 · External reference
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
10.1093/bioinformatics/btl210 · 2006 · External reference