Research graph
References from Caretta – A multiple protein structure alignment and feature extraction suite. Local targets link to admitted publications; unresolved targets remain external evidence.
Optimal sequence alignment using affine gap costs
10.1016/s0092-8240(86)90010-8 · 1986 · External reference
BAliBASE(Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
10.1093/nar/29.1.323 · 2001 · External reference
10.1093/bioinformatics/btr168
10.1093/bioinformatics/btr168 · External reference
10.1371/journal.pone.0107353
10.1371/journal.pone.0107353 · External reference
Protein multiple alignments: sequence-based versus structure-based programs
10.1093/bioinformatics/btz236 · 2019 · External reference
10.1093/bioinformatics/btp163
10.1093/bioinformatics/btp163 · External reference
Similarity-based machine learning methods for predicting drug–target interactions: a brief review
10.1093/bib/bbt056 · 2013 · External reference
mTM-align: an algorithm for fast and accurate multiple protein structure alignment
10.1093/bioinformatics/btx828 · 2017 · External reference
Unresolved reference
External reference
Structural characterization of the cyclin-dependent protein kinase family
10.1042/bst20130097 · 2013 · External reference
10.1046/j.1432-1033.2002.02767.x
10.1046/j.1432-1033.2002.02767.x · External reference
10.1093/bioinformatics/btl403
10.1093/bioinformatics/btl403 · External reference
LZW-kernel: fast kernel utilizing variable length code blocks from LZW compressors for protein sequence classification
10.1093/bioinformatics/bty349 · 2018 · External reference
The lipocalin protein family: structural and sequence overview
10.1016/s0167-4838(00)00148-5 · 2000 · External reference
10.1007/bf02257378
10.1007/bf02257378 · External reference
10.1002/prot.22458
10.1002/prot.22458 · External reference
A solution for the best rotation to relate two sets of vectors
10.1107/s0567739476001873 · 1976 · External reference
MUSTANG: a multiple structural alignment algorithm
10.1002/prot.20921 · 2006 · External reference
Automated multiple structure alignment and detection of a common substructural motif
10.1002/prot.1034 · 2001 · External reference
10.1073/pnas.0737647100
10.1073/pnas.0737647100 · External reference
MMDB and VAST+: tracking structural similarities between macromolecular complexes
10.1093/nar/gkt1208 · 2014 · External reference
Classifying kinase conformations using a machine learning approach
10.1186/s12859-017-1506-2 · 2017 · External reference
10.1371/journal.pcbi.0040010
10.1371/journal.pcbi.0040010 · External reference
Unresolved reference
External reference
Modelling the structure and function of enzymes by machine learning
10.1039/fd9929300269 · 1992 · External reference
HOMSTRAD: a database of protein structure alignments for homologous families
10.1002/pro.5560071126 · 1998 · External reference
10.1016/s0022-2836(02)00649-6
10.1016/s0022-2836(02)00649-6 · External reference
Scikit-learn: Machine learning in Python
2011 · External reference
Unresolved reference
External reference
10.1016/j.sbi.2008.05.007
10.1016/j.sbi.2008.05.007 · External reference
MAFFT-DASH: integrated protein sequence and structural alignment
2019 · External reference
The neighbor-joining method: a new method for reconstructing phylogenetic trees
1987 · External reference
Unresolved reference
External reference
Unresolved reference
2002 · External reference
parMATT: parallel multiple alignment of protein 3d-structures with translations and twists for distributed-memory systems
10.1093/bioinformatics/btz224 · 2019 · External reference
A series of PDB-related databanks for everyday needs
10.1093/nar/gku1028 · 2014 · External reference
SABmark–a benchmark for sequence alignment that covers the entire known fold space
10.1093/bioinformatics/bth493 · 2004 · External reference
Speech discrimination by dynamic programming
10.1007/bf01074755 · 1968 · External reference
10.1093/nar/gki524
10.1093/nar/gki524 · External reference
