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References from Multi-omics systems toxicology study of mouse lung assessing the effects of aerosols from two heat-not-burn tobacco products and cigarette smoke. Local targets link to admitted publications; unresolved targets remain external evidence.
Risk factors and early origins of chronic obstructive pulmonary disease
10.1016/s0140-6736(14)60446-3 · 2015 · External reference
COPD-related morbidity and mortality after smoking cessation: status of the evidence
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Evaluation of the Tobacco Heating System 2.2. Part 1: Description of the system and the scientific assessment program
10.1016/j.yrtph.2016.07.006 · 2016 · External reference
A 90-day OECD TG 413 rat inhalation study with systems toxicology endpoints demonstrates reduced exposure effects of the aerosol from the carbon heated tobacco product version 1.2 (CHTP1.2) compared with cigarette smoke. I. Inhalation exposure, clinical pathology and histopathology
10.1016/j.fct.2018.04.015 · 2018 · External reference
Evaluation of the Tobacco Heating System 2.2. Part 2: Chemical composition, genotoxicity, cytotoxicity, and physical properties of the aerosol
10.1016/j.yrtph.2016.10.001 · 2016 · External reference
A 90-day OECD TG 413 rat inhalation study with systems toxicology endpoints demonstrates reduced exposure effects of the aerosol from the carbon heated tobacco product version 1.2 (CHTP1.2) compared with cigarette smoke. II. Systems toxicology assessment
10.1016/j.fct.2018.02.058 · 2018 · External reference
The enhanced value of combining conventional and “omics” analyses in early assessment of drug-induced hepatobiliary injury
10.1016/j.taap.2010.09.022 · 2011 · External reference
10.1021/acs.chemrestox.7b00003
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Systems Toxicology
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4-Hydroxy-2-nonenal, a specific lipid peroxidation product, is elevated in lungs of patients with chronic obstructive pulmonary disease
10.1164/rccm.2110101 · 2002 · External reference
Disruption of pulmonary lipid homeostasis drives cigarette smoke-induced lung inflammation in mice
10.1183/09031936.00216914 · 2015 · External reference
Effects of mainstream cigarette smoke on the global metabolome of human lung epithelial cells
10.1021/tx8003246 · 2009 · External reference
Comparative systems toxicology analysis of cigarette smoke and aerosol from a candidate modified risk tobacco product in organotypic human gingival epithelial cultures: A 3-day repeated exposure study
10.1016/j.fct.2016.12.027 · 2017 · External reference
10.1074/jbc.m115.712331
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An 8-month systems toxicology inhalation/cessation study in apoe-/- mice to investigate cardiovascular and respiratory exposure effects of a candidate modified risk tobacco product, THS 2.2, compared with conventional cigarettes
10.1093/toxsci/kfv243 · 2016 · External reference
10.1164/rccm.201507-1311oc
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Mechanism of cisplatin proximal tubule toxicity revealed by integrating transcriptomics, proteomics, metabolomics and biokinetics
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Multi-omics approaches confirm metal ions mediate the main toxicological pathways of metal-bearing nanoparticles in lung epithelial A549 cells
2018 · External reference
10.1093/toxsci/kfy012
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Effects of cigarette smoke, cessation, and switching to two heat-not-burn tobacco products on lung lipid metabolism in C57BL/6 and Apoe-/- mice-an integrative systems toxicology analysis
10.1093/toxsci/kfv244 · 2016 · External reference
Forthcoming challenges in mycotoxins toxicology research for safer food-A need for multi-omics approach
10.3390/toxins9010018 · 2017 · External reference
A six-month systems toxicology inhalation/cessation study in ApoE−/− mice to investigate cardiovascular and respiratory exposure effects of modified risk tobacco products, CHTP 1.2 and THS 2.2, compared with conventional cigarettes
10.1016/j.fct.2019.02.008 · 2019 · External reference
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Mainstream smoke chemistry and in vitro and in vivo toxicity of the reference cigarettes 3R4F and 2R4F. Beiträge zur Tabakforschung International/Contributions to
2012 · External reference
A 7-month cigarette smoke inhalation study in C57BL/6 mice demonstrates reduced lung inflammation and emphysema following smoking cessation or aerosol exposure from a prototypic modified risk tobacco product
10.1016/j.fct.2015.03.009 · 2015 · External reference
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10.1186/gb-2004-5-10-r80
10.1186/gb-2004-5-10-r80 · External reference
Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems
10.1093/database/bav030 · 2015 · External reference
A network-based approach to quantifying the impact of biologically active substances
10.1016/j.drudis.2011.11.008 · 2012 · External reference
Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models
10.1186/1471-2105-15-238 · 2014 · External reference
Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks
10.1186/1752-0509-6-54 · 2012 · External reference
A 28-day rat inhalation study with an integrated molecular toxicology endpoint demonstrates reduced exposure effects for a prototypic modified risk tobacco product compared with conventional cigarettes
10.1016/j.fct.2014.02.034 · 2014 · External reference
10.1007/978-1-4939-2778-4_11
10.1007/978-1-4939-2778-4_11 · 2015 · External reference
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10.1016/j.csbj.2014.08.004 · Admitted local publication
Statistical inference from multiple iTRAQ experiments without using common reference standards
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10.1093/bioinformatics/18.suppl_1.s96
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10.1074/mcp.m112.021592
10.1074/mcp.m112.021592 · External reference
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The BUME method: a novel automated chloroform-free 96-well total lipid extraction method for blood plasma
10.1194/jlr.d023036 · 2012 · External reference
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Gender- and age-associated differences in serum metabolite profiles among Japanese populations
10.1248/bpb.b16-00226 · 2016 · External reference
10.15252/msb.20178124
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10.1371/journal.pcbi.1005752
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New approach for understanding genome variations in KEGG
2018 · External reference
10.1093/nar/gkw937
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miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions
10.1093/nar/gkx1067 · 2017 · External reference
PCSF: An R-package for network-based interpretation of high-throughput data
10.1371/journal.pcbi.1005694 · 2017 · External reference
An algorithm for fast preranked gene set enrichment analysis using cumulative statistic calculation
2016 · External reference
10.1093/nar/gkt111
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10.1093/nar/gkx1132
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Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure
10.12688/f1000research.10493.2 · 2017 · External reference
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ArrayExpress update–simplifying data submissions
10.1093/nar/gku1057 · 2015 · External reference
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
10.1093/nar/gks1004 · 2012 · External reference
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10.1161/hq1001.097780 · External reference
Modulation of atherogenic lipidome by cigarette smoke in apolipoprotein E-deficient mice
10.1016/j.atherosclerosis.2012.09.032 · 2012 · External reference
The Apoe-/- Mouse PhysioLab® platform: A validated physiologically-based mathematical model of atherosclerotic plaque progression in the Apoe-/- mouse
2012 · External reference
Cigarette-smoke-induced atherogenic lipid profiles in plasma and vascular tissue of apolipoprotein E-deficient mice are attenuated by smoking cessation
10.1016/j.atherosclerosis.2013.03.036 · 2013 · External reference
The Apoe−/− mouse model: a suitable model to study cardiovascular and respiratory diseases in the context of cigarette smoke exposure and harm reduction
10.1186/s12967-016-0901-1 · 2016 · External reference
Emphysema is associated with increased inflammation in lungs of atherosclerosis-prone mice by cigarette smoke: implications in comorbidities of COPD
10.1186/1476-9255-7-34 · 2010 · External reference
Cigarette smoke induces molecular responses in respiratory tissues of ApoE-/- mice that are progressively deactivated upon cessation
10.1016/j.tox.2013.09.013 · 2013 · External reference
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Case study: the role of mechanistic network models in systems toxicology
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Variable selection for generalized canonical correlation analysis
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Inflammation and immune response in COPD: where do we stand?
10.1155/2013/413735 · 2013 · External reference
Evaluation of the Tobacco Heating System 2.2. Part 6: 90-day OECD 413 rat inhalation study with systems toxicology endpoints demonstrates reduced exposure effects of a mentholated version compared with mentholated and non-mentholated cigarette smoke
10.1016/j.yrtph.2016.11.004 · 2016 · External reference
Alterations in the sputum proteome and transcriptome in smokers and early-stage COPD subjects
10.1016/j.jprot.2015.08.009 · 2015 · External reference
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10.1016/j.yrtph.2016.11.001 · External reference
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10.1016/j.cmet.2016.06.004 · External reference
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Role of polyamines in immune cell functions
2018 · External reference
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10.1084/jem.20101823 · External reference
Elevated expression of miR-146, miR-139 and miR-340 involved in regulating Th1/Th2 balance with acute exposure of fine particulate matter in mice
10.1016/j.intimp.2017.10.003 · 2018 · External reference
PDCD4 deficiency aggravated colitis and colitis-associated colorectal cancer via promoting IL-6/STAT3 pathway in mice
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Smad7 in TGF-beta-mediated negative regulation of gut inflammation
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Anti-inflammatory effects of miR-21 in the macrophage response to peritonitis
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Identification and characterization of miRNA differentially expressed in macrophages exposed to porphyromonas gingivalis infection
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ODC1 inhibits the inflammatory response and ROS-induced apoptosis in macrophages
10.1016/j.bbrc.2018.09.023 · 2018 · External reference
Metabolomic profiling of macrophages determines the discrete metabolomic signature and metabolomic interactome triggered by polarising immune stimuli
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Species heterogeneity between gerbils and rats: quinolinate production by microglia and astrocytes and accumulations in response to ischemic brain injury and systemic immune activation
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Hypothesis kynurenic and quinolinic acids: The main players of the kynurenine pathway and opponents in inflammatory disease
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Activated prostaglandin D2 receptors on macrophages enhance neutrophil recruitment into the lung
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MicroRNA-21 is up-regulated in allergic airway inflammation and regulates IL-12p35 expression
2009 · External reference
10.1016/j.ejphar.2005.12.087
10.1016/j.ejphar.2005.12.087 · External reference
Pathogenic triad in COPD: oxidative stress, protease-antiprotease imbalance, and inflammation
10.2147/copd.s10770 · 2011 · External reference
Oxidative stress in COPD
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S-glutathionylation enhances human cystathionine beta-synthase activity under oxidative stress conditions
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The critical role of phosphatidylcholine and phosphatidylethanolamine metabolism in health and disease
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10.1146/annurev-pathol-012513-104644
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LPCAT1 regulates surfactant phospholipid synthesis and is required for transitioning to air breathing in mice
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Cloning and characterization of mouse lung-type acyl-CoA:lysophosphatidylcholine acyltransferase 1 (LPCAT1). Expression in alveolar type II cells and possible involvement in surfactant production
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Altered lung phospholipid metabolism in mice with targeted deletion of lysosomal-type phospholipase A2
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A network-based approach to quantifying the impact of biologically active substances
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Cellular and molecular mechanisms of asthma and COPD
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Role of polyamines in asthma pathophysiology
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Untargeted lipidomic analysis in chronic obstructive pulmonary disease. Uncovering sphingolipids
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Lipid mediator profiling in pulmonary disease
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Cell type-resolved human lung lipidome reveals cellular cooperation in lung function
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Determining the turnover of glycosphingolipid species by stable-isotope tracer lipidomics
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