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References from Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates. Local targets link to admitted publications; unresolved targets remain external evidence.
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Robust and automated three-dimensional segmentation of densely packed cell nuclei in different biological specimens with Lines-of-Sight decomposition
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Quantitative analysis of protein expression to study lineage specification in mouse preimplantation embryos
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2020 · External reference
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Segmentation of image data from complex organotypic 3D models of cancer tissues with Markov random fields
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3D cell nuclei segmentation based on gradient flow tracking
10.1186/1471-2121-8-40 · 2007 · External reference
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Biologically constrained optimization based cell membrane segmentation in C. elegans embryos
10.1186/s12859-017-1717-6 · 2017 · External reference
Automated cell boundary and 3D nuclear segmentation of cells in suspension
10.1038/s41598-019-46689-5 · 2019 · External reference
LimeSeg: a coarse-grained lipid membrane simulation for 3D image segmentation
10.1186/s12859-018-2471-0 · 2019 · External reference
A generic classification-based method for segmentation of nuclei in 3D images of early embryos
10.1186/1471-2105-15-9 · 2014 · External reference
Automated detection and tracking of many cells by using 4D live-cell imaging data
10.1093/bioinformatics/btu271 · 2014 · External reference
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SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter
10.1109/tcbb.2017.2782255 · 2017 · External reference
Unresolved reference
External reference
3DMMS: robust 3D membrane morphological segmentation of C. elegans embryo
10.1186/s12859-019-2720-x · 2019 · External reference
10.1038/s41592-018-0106-z
10.1038/s41592-018-0106-z · External reference
Convolutional neural network-based instance segmentation algorithm to acquire quantitative criteria of early mouse development
2018 · External reference
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