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References from IGAP-integrative genome analysis pipeline reveals new gene regulatory model associated with nonspecific TF-DNA binding affinity. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nature13668
10.1038/nature13668 · External reference
Unresolved reference
External reference
10.1038/nature11247
10.1038/nature11247 · External reference
10.1038/nature08497
10.1038/nature08497 · External reference
How do genome-regulatory proteins locate their DNA target sites
10.1016/0968-0004(82)90075-5 · 1982 · External reference
10.1016/j.cell.2013.09.011
10.1016/j.cell.2013.09.011 · External reference
Protein–DNA binding: complexities and multi-protein codes
10.1093/nar/gkt1112 · 2013 · External reference
10.1038/ng1089
10.1038/ng1089 · External reference
10.1016/j.tig.2014.04.002
10.1016/j.tig.2014.04.002 · External reference
10.1126/science.1162327
10.1126/science.1162327 · External reference
Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution
10.1098/rstb.2013.0018 · 2013 · External reference
10.1038/s41467-018-03279-9
10.1038/s41467-018-03279-9 · External reference
10.1038/nature13668
10.1038/nature13668 · External reference
10.1186/gb-2012-13-9-r48
10.1186/gb-2012-13-9-r48 · External reference
10.1186/1471-2164-14-720
10.1186/1471-2164-14-720 · External reference
10.1016/j.cell.2013.09.043
10.1016/j.cell.2013.09.043 · External reference
10.1038/nsmb.2470
10.1038/nsmb.2470 · External reference
10.1073/pnas.1708028115
10.1073/pnas.1708028115 · External reference
10.1016/j.celrep.2016.10.061
10.1016/j.celrep.2016.10.061 · External reference
10.1016/j.devcel.2008.11.011
10.1016/j.devcel.2008.11.011 · External reference
Enhancers and chromatin structures: regulatory hubs in gene expression and diseases
2017 · External reference
10.1126/science.1067799
10.1126/science.1067799 · External reference
On the specificity of DNA-protein interactions
10.1073/pnas.83.6.1608 · 1986 · External reference
10.1101/gr.1271603
10.1101/gr.1271603 · External reference
10.1093/bioinformatics/btl223
10.1093/bioinformatics/btl223 · External reference
10.1093/bioinformatics/btl565
10.1093/bioinformatics/btl565 · External reference
BayesPI-BAR2: A New Python Package for Predicting Functional Non-coding Mutations in Cancer Patient Cohorts
10.3389/fgene.2019.00282 · 2019 · External reference
10.1371/journal.pcbi.1000590
10.1371/journal.pcbi.1000590 · External reference
BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors
10.1186/1471-2105-10-345 · 2009 · External reference
Predicting Variation of DNA Shape Preferences in Protein-DNA Interaction in Cancer Cells with a New Biophysical Model
10.3390/genes8090233 · 2017 · External reference
10.1186/1471-2164-16-s7-s12
10.1186/1471-2164-16-s7-s12 · External reference
BayesPI-BAR: a new biophysical model for characterization of regulatory sequence variations
2015 · External reference
Integrative whole-genome sequence analysis reveals roles of regulatory mutations in BCL6 and BCL2 in follicular lymphoma
10.1038/s41598-017-07226-4 · 2017 · External reference
Diffusion-driven mechanisms of protein translocation on nucleic-acids. 1. Models and theory
10.1021/bi00527a028 · 1981 · External reference
How proteins slide on DNA, in biophysics of DNA-protein interactions
2010 · External reference
Pausing of the restriction endonuclease EcoRI during linear diffusion on DNA
10.1021/bi00200a001 · 1994 · External reference
10.1093/bioinformatics/btw495
10.1093/bioinformatics/btw495 · External reference
10.1038/nprot.2017.124
10.1038/nprot.2017.124 · External reference
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
10.1038/nmeth.1937 · 2012 · External reference
Integrative annotation of chromatin elements from ENCODE data
10.1093/nar/gks1284 · 2013 · External reference
10.1093/nar/gkn488
10.1093/nar/gkn488 · External reference
10.1016/j.ccr.2012.05.024
10.1016/j.ccr.2012.05.024 · External reference
10.1038/emboj.2009.88
10.1038/emboj.2009.88 · External reference
10.1093/nar/gky1095
10.1093/nar/gky1095 · External reference
Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells
10.1186/s13059-015-0768-0 · 2015 · External reference
10.1016/j.cell.2014.11.021
10.1016/j.cell.2014.11.021 · External reference
10.1093/nar/gks1193
10.1093/nar/gks1193 · External reference
10.1093/bioinformatics/btq033
10.1093/bioinformatics/btq033 · External reference
ChIPnorm: A statistical method for normalizing and identifying differential regions in histone modification ChIP-seq libraries
2012 · External reference
10.1186/1471-2164-14-70
10.1186/1471-2164-14-70 · External reference
10.1038/nsmb.1936
10.1038/nsmb.1936 · External reference
10.1093/imanum/drs019
10.1093/imanum/drs019 · External reference
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
10.1038/nmeth.2148 · 2012 · External reference
10.1007/s10955-009-9814-1
10.1007/s10955-009-9814-1 · External reference
10.1016/j.bpj.2011.04.037
10.1016/j.bpj.2011.04.037 · External reference
Unresolved reference
2007 · External reference
Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
10.1016/0022-2836(87)90354-8 · 1987 · External reference
10.1016/j.jbi.2007.02.003
10.1016/j.jbi.2007.02.003 · External reference
Scikit-learn: machine learning in python
2011 · External reference
10.1093/nar/gkm415
10.1093/nar/gkm415 · External reference
10.1093/nar/gkp464
10.1093/nar/gkp464 · External reference
10.1093/bioinformatics/btn627
10.1093/bioinformatics/btn627 · External reference
Detection of functional DNA motifs via statistical over-representation
10.1093/nar/gkh299 · 2004 · External reference
10.1073/pnas.0605003103
10.1073/pnas.0605003103 · External reference
10.1038/nbt.1630
10.1038/nbt.1630 · External reference
10.1038/nrg3663
10.1038/nrg3663 · External reference
Constructing 3D interaction maps from 1D epigenomes
2016 · External reference
10.1101/gr.176586.114
10.1101/gr.176586.114 · External reference
10.1016/j.tibs.2014.07.002
10.1016/j.tibs.2014.07.002 · External reference
10.1016/s1097-2765(02)00781-5
10.1016/s1097-2765(02)00781-5 · External reference
10.1126/science.1123191
10.1126/science.1123191 · External reference
10.1016/j.sbi.2016.05.006
10.1016/j.sbi.2016.05.006 · External reference
10.1016/j.jmb.2009.10.031
10.1016/j.jmb.2009.10.031 · External reference
