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References from HiPR: High-throughput probabilistic RNA structure inference. Local targets link to admitted publications; unresolved targets remain external evidence.
RNA STRAND: the RNA secondary structure and statistical analysis database
10.1186/1471-2105-9-340 · 2008 · External reference
10.1038/s41594-018-0091-z
10.1038/s41594-018-0091-z · External reference
10.1186/1471-2105-3-2
10.1186/1471-2105-3-2 · External reference
10.1021/bi3008802
10.1021/bi3008802 · External reference
Accurate SHAPE-directed RNA structure determination
10.1073/pnas.0806929106 · 2009 · External reference
10.1261/rna.2500605
10.1261/rna.2500605 · External reference
10.1038/nature12756
10.1038/nature12756 · External reference
RNA structural motifs: building blocks of a modular biomolecule
10.1017/s0033583506004215 · 2005 · External reference
Conserved RNA structures in the non-canonical Hac1/Xbp1 intron
10.4161/rna.8.4.15396 · 2011 · External reference
Phylogenetic comparative analysis of RNA secondary structure
10.1016/0076-6879(89)80104-1 · 1989 · External reference
Efficient randomized pattern-matching algorithms
10.1147/rd.312.0249 · 1987 · External reference
10.1038/nature09322
10.1038/nature09322 · External reference
10.1021/bi200524n
10.1021/bi200524n · External reference
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products
10.1093/bioinformatics/bty709 · 2018 · External reference
10.1261/rna.064469.117
10.1261/rna.064469.117 · External reference
DASHR: database of small human noncoding RNAs
10.1093/nar/gkv1188 · 2016 · External reference
Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome
10.1105/tpc.112.104232 · 2012 · External reference
ViennaRNA Package 2.0
10.1186/1748-7188-6-26 · 2011 · External reference
RNA folding with hard and soft constraints
10.1186/s13015-016-0070-z · 2016 · External reference
10.1016/j.ymeth.2010.06.007
10.1016/j.ymeth.2010.06.007 · External reference
10.1261/rna.1643609
10.1261/rna.1643609 · External reference
10.1073/pnas.0401799101
10.1073/pnas.0401799101 · External reference
10.1006/jmbi.1999.2700
10.1006/jmbi.1999.2700 · External reference
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
10.1002/bip.360290621 · 1990 · External reference
RNA structure analysis at single nucleotide resolution by selective 2‘-hydroxyl acylation and primer extension (SHAPE)
10.1021/ja043822v · 2005 · External reference
10.1016/j.molcel.2018.09.003
10.1016/j.molcel.2018.09.003 · External reference
10.1016/j.cell.2018.02.034
10.1016/j.cell.2018.02.034 · External reference
Rfam 12.0: updates to the RNA families database
10.1093/nar/gku1063 · 2015 · External reference
10.1101/gr.138545.112
10.1101/gr.138545.112 · External reference
10.1038/nature06684
10.1038/nature06684 · External reference
10.1261/rna.1988510
10.1261/rna.1988510 · External reference
RNAstructure: software for RNA secondary structure prediction and analysis
10.1186/1471-2105-11-129 · 2010 · External reference
Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo
10.1093/nar/gkx533 · 2017 · External reference
10.1038/nature12894
10.1038/nature12894 · External reference
10.1038/nmeth.3029
10.1038/nmeth.3029 · External reference
In vivo analysis of influenza A mRNA secondary structures identifies critical regulatory motifs
10.1093/nar/gkz318 · 2019 · External reference
10.1038/nprot.2015.103
10.1038/nprot.2015.103 · External reference
Structural imprints in vivo decode RNA regulatory mechanisms
10.1038/nature14263 · 2015 · External reference
10.1093/nar/gks1283
10.1093/nar/gks1283 · External reference
10.1038/s41594-019-0200-7
10.1038/s41594-019-0200-7 · External reference
10.1261/rna.042218.113
10.1261/rna.042218.113 · External reference
10.1038/nmeth.1529
10.1038/nmeth.1529 · External reference
10.1093/nar/gks009
10.1093/nar/gks009 · External reference
10.1016/j.ymeth.2016.04.002
10.1016/j.ymeth.2016.04.002 · External reference
10.1093/nar/gkv706
10.1093/nar/gkv706 · External reference
10.1007/978-1-4939-6433-8_10
10.1007/978-1-4939-6433-8_10 · External reference
Integrating chemical footprinting data into RNA secondary structure prediction
10.1371/journal.pone.0045160 · 2012 · External reference
10.1371/journal.pgen.1001141
10.1371/journal.pgen.1001141 · External reference
Assaying RNA structure with LASER-Seq
10.1093/nar/gky1172 · 2018 · External reference
10.1038/nmeth.4057
10.1038/nmeth.4057 · External reference
10.1093/nar/9.1.133
10.1093/nar/9.1.133 · External reference
