Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions. Local targets link to admitted publications; unresolved targets remain external evidence.
NMR relaxation studies of the role of conformational entropy in protein stability and ligand binding
10.1021/ar000079c · 2001 · External reference
Direct determination of vibrational density of states change on ligand binding to a protein
10.1103/physrevlett.93.028103 · 2004 · External reference
10.1039/c0cs00113a
10.1039/c0cs00113a · External reference
10.1038/ncomms4999
10.1038/ncomms4999 · External reference
Unresolved reference
2006 · External reference
10.1038/ncomms4076
10.1038/ncomms4076 · External reference
Theory of Acoustic Raman Modes in Proteins
10.1103/physrevlett.117.138101 · 2016 · External reference
10.1038/nphoton.2014.283
10.1038/nphoton.2014.283 · External reference
Conformational change of proteins arising from normal mode calculations
10.1093/protein/14.1.1 · 2001 · External reference
10.1146/annurev.biophys.093008.131258
10.1146/annurev.biophys.093008.131258 · External reference
Features of large hinge-bending conformational transitions. Prediction of closed structure from open state
10.1016/j.bpj.2014.05.017 · 2014 · External reference
10.1002/(sici)1097-0134(19981115)33:3<417::aid-prot10>3.0.co;2-8
10.1002/(sici)1097-0134(19981115)33:3<417::aid-prot10>3.0.co;2-8 · External reference
10.1073/pnas.0507603102
10.1073/pnas.0507603102 · External reference
10.1073/pnas.0904214106
10.1073/pnas.0904214106 · External reference
10.1111/j.1432-1033.1977.tb11885.x
10.1111/j.1432-1033.1977.tb11885.x · External reference
Enhanced rigid-bond restraints
10.1107/s0108767312014535 · 2012 · External reference
Anisotropic atomic motions in high-resolution protein crystallography molecular dynamics simulations
10.1088/1478-3975/4/2/002 · 2007 · External reference
Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models
10.1093/bioinformatics/btm186 · 2007 · External reference
Local dynamics of proteins and DNA evaluated from crystallographic B factors
10.1107/s1399004714014631 · 2014 · External reference
10.1021/bi00124a006
10.1021/bi00124a006 · External reference
10.1073/pnas.1111325108
10.1073/pnas.1111325108 · External reference
10.1016/s0006-3495(02)75203-x
10.1016/s0006-3495(02)75203-x · External reference
10.1002/prot.22518
10.1002/prot.22518 · External reference
10.1371/journal.pone.0113265
10.1371/journal.pone.0113265 · External reference
10.1021/cr900095e
10.1021/cr900095e · External reference
10.1021/ct3000316
10.1021/ct3000316 · External reference
10.1063/1.4816375
10.1063/1.4816375 · External reference
10.1016/j.sbi.2017.10.002
10.1016/j.sbi.2017.10.002 · External reference
10.1016/j.str.2019.01.003
10.1016/j.str.2019.01.003 · External reference
Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior
10.1016/j.sbi.2019.11.002 · 2019 · External reference
Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response
2018 · External reference
10.1021/acs.jcim.6b00039
10.1021/acs.jcim.6b00039 · External reference
PARS: a web server for the prediction of Protein Allosteric and Regulatory Sites
10.1093/bioinformatics/btu002 · 2014 · External reference
10.1016/j.str.2016.03.008
10.1016/j.str.2016.03.008 · External reference
10.1371/journal.pbio.1001651
10.1371/journal.pbio.1001651 · External reference
Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin
10.1371/journal.pcbi.1005319 · 2017 · External reference
10.1021/acs.jctc.6b01181
10.1021/acs.jctc.6b01181 · External reference
Prediction of allosteric sites and mediating interactions through bond-to-bond propensities
10.1038/ncomms12477 · 2016 · External reference
AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis
10.1186/s12859-015-0771-1 · 2015 · External reference
10.1021/acs.jcim.7b00014
10.1021/acs.jcim.7b00014 · External reference
10.1002/prot.25749
10.1002/prot.25749 · External reference
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
10.1371/journal.pcbi.1000585 · 2009 · External reference
Fpocket: An open source platform for ligand pocket detection
10.1186/1471-2105-10-168 · 2009 · External reference
10.1021/cb1002619
10.1021/cb1002619 · External reference
10.1006/jmbi.1999.3494
10.1006/jmbi.1999.3494 · External reference
10.1016/s0969-2126(97)00259-1
10.1016/s0969-2126(97)00259-1 · External reference
RESPEC Incorporates Residue Specificity and the Ligand Effect into the Elastic Network Model
10.1021/acs.jpcb.7b10325 · 2018 · External reference
10.1021/acs.jcim.8b00946
10.1021/acs.jcim.8b00946 · External reference
10.1016/j.bpj.2015.06.031
10.1016/j.bpj.2015.06.031 · External reference
10.1002/prot.340170408
10.1002/prot.340170408 · External reference
10.1016/s1359-0278(97)00024-2
10.1016/s1359-0278(97)00024-2 · External reference
10.1103/physrevlett.79.3090
10.1103/physrevlett.79.3090 · External reference
10.1093/nar/gkv1236
10.1093/nar/gkv1236 · External reference
Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: Application to alpha-amylase inhibitor
10.1002/1097-0134(20000815)40:3<512::aid-prot180>3.0.co;2-m · 2000 · External reference
10.1016/s0006-3495(01)76033-x
10.1016/s0006-3495(01)76033-x · External reference
10.1093/bioinformatics/btu847
10.1093/bioinformatics/btu847 · External reference
10.1093/bioinformatics/btr168
10.1093/bioinformatics/btr168 · External reference
10.1016/s0301-0104(00)00222-6
10.1016/s0301-0104(00)00222-6 · External reference
10.1038/nsmb.2318
10.1038/nsmb.2318 · External reference
Exploitation of structural and regulatory diversity in glutamate racemases
10.1038/nature05689 · 2007 · External reference
10.1371/journal.pcbi.1004775
10.1371/journal.pcbi.1004775 · External reference
10.1093/molbev/mss097
10.1093/molbev/mss097 · External reference
10.1146/annurev-biophys-052118-115517
10.1146/annurev-biophys-052118-115517 · External reference
10.1093/nar/gkw408
10.1093/nar/gkw408 · External reference
10.1021/acs.jctc.6b00319
10.1021/acs.jctc.6b00319 · External reference
Structure of the wild-type TEM-1 beta-lactamase at 1.55 A and the mutant enzyme Ser70Ala at 2.1 A suggest the mode of noncovalent catalysis for the mutant enzyme
10.1107/s0907444905014356 · 2005 · External reference
10.1073/pnas.94.6.2327
10.1073/pnas.94.6.2327 · External reference
Analysis of tractable allosteric sites in G protein-coupled receptors
10.1038/s41598-019-42618-8 · 2019 · External reference
10.1038/nature12735
10.1038/nature12735 · External reference
10.1038/nsmb.3417
10.1038/nsmb.3417 · External reference
10.1016/j.chembiol.2010.12.013
10.1016/j.chembiol.2010.12.013 · External reference
10.1126/science.aaw5188
10.1126/science.aaw5188 · External reference
Set of Measures of Centrality Based on Betweenness
10.2307/3033543 · 1977 · External reference
Unresolved reference
2008 · External reference
10.1038/nature05351
10.1038/nature05351 · External reference
10.1021/ct300117j
10.1021/ct300117j · External reference
Moving Beyond Active-Site Detection: MixMD Applied to Allosteric Systems
10.1021/acs.jpcb.6b03515 · 2016 · External reference
Free Energies and Entropies of Binding Sites Identified by MixMD Cosolvent Simulations
10.1021/acs.jcim.8b00925 · 2019 · External reference
10.1038/nature08624
10.1038/nature08624 · External reference
10.1016/j.str.2018.10.017
10.1016/j.str.2018.10.017 · External reference
10.1038/emboj.2011.17
10.1038/emboj.2011.17 · External reference
Structural dynamics is a determinant of the functional significance of missense variants
10.1073/pnas.1715896115 · 2018 · External reference
10.1093/bioinformatics/btaa127
10.1093/bioinformatics/btaa127 · External reference
