Research graph
References from COSMO: A dynamic programming algorithm for multicriteria codon optimization. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.molcel.2015.05.035
10.1016/j.molcel.2015.05.035 · External reference
Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure
10.1371/journal.pone.0000847 · 2007 · External reference
Nonrandom utilization of codon pairs in Escherichia coli
10.1073/pnas.86.10.3699 · 1989 · External reference
10.7717/peerj.3081
10.7717/peerj.3081 · External reference
10.1016/j.tig.2017.02.001
10.1016/j.tig.2017.02.001 · External reference
10.1016/j.jmb.2019.04.021
10.1016/j.jmb.2019.04.021 · External reference
10.1038/nrm.2017.91
10.1038/nrm.2017.91 · External reference
10.1016/j.csbj.2017.08.001 · Admitted local publication
Computational tools and algorithms for designing customized synthetic genes
10.3389/fbioe.2014.00041 · 2014 · External reference
Unresolved reference
2001 · External reference
10.1093/bioinformatics/bts465
10.1093/bioinformatics/bts465 · External reference
10.1093/bioinformatics/btu192
10.1093/bioinformatics/btu192 · External reference
Evolutionary design of multiple genes encoding the same protein
10.1093/bioinformatics/btx030 · 2017 · External reference
Efficient codon optimization with motif engineering
10.1016/j.jda.2012.04.017 · 2012 · External reference
The codon adaptation index – a measure of directional synonymous codon usage bias, and its potential applications
10.1093/nar/15.3.1281 · 1987 · External reference
Codon context optimization in synthetic gene design
10.1109/tcbb.2016.2542808 · 2018 · External reference
Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models
10.1093/nar/gkg306 · 2003 · External reference
10.1126/science.1155761
10.1126/science.1155761 · External reference
The ambush hypothesis: hidden stop codons prevent off-frame gene reading
10.1089/dna.2004.23.701 · 2004 · External reference
Multidimensional divide-and-conquer
10.1145/358841.358850 · 1980 · External reference
Structural RNA alignment by multi-objective optimisation
10.1093/bioinformatics/btt188 · 2013 · External reference
Improvements on bicriteria pairwise sequence alignment: algorithms and applications
10.1093/bioinformatics/btt098 · 2013 · External reference
UniProt: the universal protein knowledgebase
10.1093/nar/gkw1099 · 2017 · External reference
Saccharomyces genome database: the genomics resource of budding yeast
10.1093/nar/gkr1029 · 2012 · External reference
10.1109/4235.996017
10.1109/4235.996017 · External reference
Multiobjective optimization using evolutionary algorithms – a comparative case study
10.1007/bfb0056872 · 1998 · External reference
Solving the riddle of codon usage preferences: a test for translational selection
10.1093/nar/gkh834 · 2004 · External reference
10.1093/nar/gkz831
10.1093/nar/gkz831 · External reference
RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies
10.7554/elife.04531 · 2014 · External reference
Localized context-dependent effects of the gAmbush hypothesis: more off-frame stop codons downstream of shifty codons
10.1089/dna.2019.4725 · 2019 · External reference
