Research graph
References from ProtExA: A tool for post-processing proteomics data providing differential expression metrics, co-expression networks and functional analytics. Local targets link to admitted publications; unresolved targets remain external evidence.
A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation
2017 · External reference
10.1093/nar/gkx444
10.1093/nar/gkx444 · External reference
10.1038/s41598-018-31154-6
10.1038/s41598-018-31154-6 · External reference
Updates on resources, software tools, and databases for plant proteomics in 2016–2017
10.1002/elps.201700401 · 2018 · External reference
Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches
2017 · External reference
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
10.1038/nmeth.3732 · 2016 · External reference
10.1101/gr.1239303
10.1101/gr.1239303 · External reference
Inference of gene regulatory networks from time series by Tsallis entropy
10.1186/1752-0509-5-61 · 2011 · External reference
Comparison of co-expression measures: mutual information, correlation, and model based indices
10.1186/1471-2105-13-328 · 2012 · External reference
The igraph software package for complex network research
2006 · External reference
10.1093/nar/gkv007
10.1093/nar/gkv007 · External reference
10.1093/bioinformatics/btr274
10.1093/bioinformatics/btr274 · External reference
10.1093/nar/gkw377
10.1093/nar/gkw377 · External reference
Botstein D: Imputing missing data for gene expression arrays
1999 · External reference
10.1093/bioinformatics/17.6.520
10.1093/bioinformatics/17.6.520 · External reference
10.2202/1544-6115.1027
10.2202/1544-6115.1027 · External reference
Remark AS R94: A remark on algorithm AS 181: The W-test for normality
1995 · External reference
10.1371/journal.pbio.0050008
10.1371/journal.pbio.0050008 · External reference
Dalla Favera R, Califano A: ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. In BMC bioinformatics
2006 · External reference
Inferring the conservative causal core of gene regulatory networks
10.1186/1752-0509-4-132 · 2010 · External reference
Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy
10.1109/tpami.2005.159 · 2005 · External reference
10.1186/1471-2105-9-559
10.1186/1471-2105-9-559 · External reference
Unresolved reference
2005 · External reference
10.1103/physreve.70.066111
10.1103/physreve.70.066111 · External reference
10.1103/physreve.74.036104
10.1103/physreve.74.036104 · External reference
10.1103/physreve.69.026113
10.1103/physreve.69.026113 · External reference
On modularity clustering
10.1109/tkde.2007.190689 · 2008 · External reference
Revealing clusters of connected pathways through multisource data integration in Huntington's disease and spastic ataxia
2018 · External reference
10.1038/nmeth.3901
10.1038/nmeth.3901 · External reference
Graphical interpretation and analysis of proteins and their ontologies (GiaPronto): A one-click graph visualization software for proteomics data sets
10.1074/mcp.tir117.000438 · 2018 · External reference
LFQ-analyst: an easy-to-use interactive web platform to analyze and visualize label-free proteomics data preprocessed with MaxQuant
2019 · External reference
NetGestalt: integrating multidimensional omics data over biological networks
10.1038/nmeth.2517 · 2013 · External reference
PathwayConnector: finding complementary pathways to enhance functional analysis
2018 · External reference
The KEGG database
10.1002/0470857897.ch8 · 2002 · External reference
10.1093/nar/gkq1018
10.1093/nar/gkq1018 · External reference
10.1049/iet-syb.2010.0025
10.1049/iet-syb.2010.0025 · External reference
Genome scale modeling in systems biology: algorithms and resources
10.2174/1389202915666140319002221 · 2014 · External reference
10.1038/srep09185
10.1038/srep09185 · External reference
Learning from co-expression networks: possibilities and challenges
10.3389/fpls.2016.00444 · 2016 · External reference