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References from Exploring protein phosphorylation by combining computational approaches and biochemical methods. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1371/journal.pcbi.1004049
10.1371/journal.pcbi.1004049 · External reference
Molecular mechanisms of insulin resistance: serine phosphorylation of insulin receptor substrate-1 and increased expression of p85alpha: the two sides of a coin
10.2337/db06-0391 · 2006 · External reference
10.1016/j.ceb.2009.01.028
10.1016/j.ceb.2009.01.028 · External reference
Cytochrome c is tyrosine 97 phosphorylated by neuroprotective insulin treatment
10.1371/journal.pone.0078627 · 2013 · External reference
10.1038/ncb3289
10.1038/ncb3289 · External reference
10.3892/ijmm.2017.3036
10.3892/ijmm.2017.3036 · External reference
Why nature chose phosphate to modify proteins
10.1098/rstb.2012.0013 · 2012 · External reference
Reversal of Rous sarcoma-specific immunoglobulin phosphorylation on tyrosine (ADP as phosphate acceptor) catalyzed by the src gene kinase
10.1073/pnas.80.7.1872 · 1983 · External reference
Specific dephosphorylation of phosphoproteins by protein-serine and -tyrosine kinases
10.1073/pnas.85.16.5849 · 1988 · External reference
10.1002/pmic.200300772
10.1002/pmic.200300772 · External reference
Histidine phosphorylation in biological systems
10.1016/j.bbapap.2007.07.008 · 2008 · External reference
Phosphorylation of basic amino acid residues in proteins: important but easily missed
10.18388/abp.2011_2258 · 2011 · External reference
10.1093/nar/gkh253
10.1093/nar/gkh253 · External reference
10.1073/pnas.1321007111
10.1073/pnas.1321007111 · External reference
Orientation of the central domains of KSRP and its implications for the interaction with the RNA targets
10.1093/nar/gkq216 · 2010 · External reference
Phosphorylation-mediated unfolding of a KH domain regulates KSRP localization via 14-3-3 binding
10.1038/nsmb.1558 · 2009 · External reference
10.1038/nature13999
10.1038/nature13999 · External reference
10.1016/j.jchromb.2006.09.016
10.1016/j.jchromb.2006.09.016 · External reference
Protein pI shifts due to posttranslational modifications in the separation and characterization of proteins
10.1021/ac048494w · 2005 · External reference
ProMoST: a tool for calculating the pI and molecular mass of phosphorylated and modified proteins on two-dimensional gels
2009 · External reference
pICalculax: improved prediction of isoelectric point for modified peptides
10.1021/acs.jcim.7b00030 · 2017 · External reference
Immobilized-metal affinity chromatography (IMAC): a review
10.1016/s0076-6879(09)63027-5 · 2009 · External reference
Optimized enrichment ofpPhosphoproteomes by Fe-IMAC column chromatography
10.1007/978-1-4939-6747-6_5 · 2017 · External reference
10.1074/mcp.t500024-mcp200
10.1074/mcp.t500024-mcp200 · External reference
Using Phos-Tag in Western Blotting analysis to evaluate protein phosphorylation
10.1007/978-1-4939-3353-2_18 · 2016 · External reference
A simple method for detecting phosphorylation of proteins by using Zn(2+)-Phos-Tag SDS-PAGE at neutral pH
10.1007/978-1-4939-8745-0_25 · 2018 · External reference
Analysis of protein phosphorylation using Phos-Tag gels
10.1002/cpps.64 · 2018 · External reference
Recent advances in enrichment and separation strategies for mass spectrometry-based phosphoproteomics
10.1002/elps.201400017 · 2014 · External reference
Enrichment strategies in phosphoproteomics
10.1007/978-1-4939-3049-4_7 · 2016 · External reference
Improved enrichment strategies for phosphorylated peptides on titanium dioxide using methyl esterification and pH gradient elution
10.1016/j.ab.2008.03.024 · 2008 · External reference
10.1002/pmic.200700145
10.1002/pmic.200700145 · External reference
10.1021/pr7006544
10.1021/pr7006544 · External reference
SILAC-based temporal phosphoproteomics
10.1007/978-1-4939-1142-4_10 · 2014 · External reference
Optimization of titanium dioxide and immunoaffinity-based enrichment procedures for tyrosine phosphopeptide using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
10.1007/s00216-014-8352-0 · 2015 · External reference
10.1021/acs.jproteome.6b00905
10.1021/acs.jproteome.6b00905 · External reference
Identification of tyrosine phosphorylated proteins by SH2 domain affinity purification and mass spectrometry
10.1007/978-1-4939-6762-9_23 · 2017 · External reference
SH2 Domains as affinity reagents for phosphotyrosine protein enrichment and proteomic analysis
10.1007/978-1-4939-6762-9_22 · 2017 · External reference
10.1126/scisignal.2003021
10.1126/scisignal.2003021 · External reference
10.1038/nbt.3327
10.1038/nbt.3327 · External reference
Impact of phosphoproteomics in the translation of kinase-targeted therapies
10.1002/pmic.201600235 · 2017 · External reference
10.1038/s41585-018-0014-0
10.1038/s41585-018-0014-0 · External reference
10.1016/j.jchromb.2018.10.022
10.1016/j.jchromb.2018.10.022 · External reference
In vitro phosphorylation of insulin receptor substrate 1 by protein kinase C-zeta: functional analysis and identification of novel phosphorylation sites
10.1021/bi049640v · 2004 · External reference
Bacterial expression, purification, and crystallization of tyrosine phosphorylated STAT proteins
10.1007/978-1-62703-242-1_21 · 2013 · External reference
Comparative analysis of a FRET-based PLK1 kinase assay to identify PLK1 inhibitors for chemotherapy
10.21873/anticanres.11431 · 2017 · External reference
Aromatic L-amino acid decarboxylase phosphorylation and activation by PKGIalpha in vitro
10.1111/j.1471-4159.2010.06784.x · 2010 · External reference
In vitro JAK kinase activity and inhibition assays
10.1007/978-1-62703-242-1_3 · 2013 · External reference
Effects of antibodies to phosphorylated and non-phosphorylated tau on in vitro tau phosphorylation at Serine-199: Preliminary report
10.1016/j.exger.2015.04.010 · 2015 · External reference
10.1016/s0021-9258(18)60975-5
10.1016/s0021-9258(18)60975-5 · External reference
10.1016/j.cell.2011.08.052
10.1016/j.cell.2011.08.052 · External reference
Constitutive activation of Mek1 by mutation of serine phosphorylation sites
10.1073/pnas.91.19.8960 · 1994 · External reference
10.1128/mcb.23.5.1590-1601.2003
10.1128/mcb.23.5.1590-1601.2003 · External reference
10.1016/j.cell.2006.12.032
10.1016/j.cell.2006.12.032 · External reference
Use of phospho-site substitutions to analyze the biological relevance of phosphorylation events in regulatory networks
10.1007/978-1-61779-264-9_6 · 2011 · External reference
Characterization of phospho-(tyrosine)-mimetic calmodulin mutants
10.1371/journal.pone.0120798 · 2015 · External reference
10.1038/sj.onc.1203304
10.1038/sj.onc.1203304 · External reference
A critical view on conservative mutations
10.1093/protein/14.6.397 · 2001 · External reference
Incorporation of non-canonical amino acids into proteins by global reassignment of sense codons
10.1007/978-1-4939-7893-9_13 · 2018 · External reference
10.3390/ijms16036513
10.3390/ijms16036513 · External reference
10.1016/j.jmb.2009.10.030
10.1016/j.jmb.2009.10.030 · External reference
10.1021/bi4000244
10.1021/bi4000244 · External reference
Incorporation of Non-Canonical Amino Acids
10.1007/978-1-4939-2845-3_7 · 2015 · External reference
10.3390/genes9110546
10.3390/genes9110546 · External reference
10.1371/journal.pone.0031992
10.1371/journal.pone.0031992 · External reference
10.1021/cb5006273
10.1021/cb5006273 · External reference
10.1002/anie.200904035
10.1002/anie.200904035 · External reference
Use of EF-Tu mutants for determining and improving aminoacylation efficiency and for purifying aminoacyl tRNAs with non-natural amino acids
10.1093/jb/mvq053 · 2010 · External reference
10.1021/sb500195w
10.1021/sb500195w · External reference
10.1021/acschembio.9b00088
10.1021/acschembio.9b00088 · External reference
10.1038/nbt1314
10.1038/nbt1314 · External reference
10.1038/nchembio.657
10.1038/nchembio.657 · External reference
10.1021/acschembio.9b00307
10.1021/acschembio.9b00307 · External reference
10.1021/ja043875c
10.1021/ja043875c · External reference
10.1021/cb5000532
10.1021/cb5000532 · External reference
Site-specific incorporation of unnatural amino acids into Escherichia coli recombinant protein: methodology development and recent achievement
2019 · External reference
10.1021/acssynbio.9b00076
10.1021/acssynbio.9b00076 · External reference
10.1038/nchembio.2405
10.1038/nchembio.2405 · External reference
The application of cell-free protein synthesis in genetic code expansion for post-translational modifications
10.3389/fphar.2019.00248 · 2019 · External reference
10.1007/s00253-019-09690-6
10.1007/s00253-019-09690-6 · External reference
10.1038/ncomms9168
10.1038/ncomms9168 · External reference
10.1126/science.1207203
10.1126/science.1207203 · External reference
10.1038/srep17204
10.1038/srep17204 · External reference
10.1002/cbic.201402291
10.1002/cbic.201402291 · External reference
10.1016/j.synbio.2019.10.002
10.1016/j.synbio.2019.10.002 · External reference
A novel phosphotyrosine mimetic 4’-carboxymethyloxy-3’-phosphonophenylalanine (Cpp): exploitation in the design of nonpeptide inhibitors of pp60(Src) SH2 domain
10.1016/s0960-894x(01)00446-2 · 2001 · External reference
Discovery of a new phosphotyrosine mimetic for PTP1B using breakaway tethering
10.1021/ja034440c · 2003 · External reference
10.1038/nbt1254
10.1038/nbt1254 · External reference
10.1021/cb700083w
10.1021/cb700083w · External reference
10.1002/anie.200902118
10.1002/anie.200902118 · External reference
10.1002/1873-3468.12333
10.1002/1873-3468.12333 · External reference
10.1038/nchembio.2406
10.1038/nchembio.2406 · External reference
10.1038/nmeth.4302
10.1038/nmeth.4302 · External reference
10.1016/j.neuron.2018.08.011
10.1016/j.neuron.2018.08.011 · External reference
10.1038/nsmb1309
10.1038/nsmb1309 · External reference
Calmodulin gates Aquaporin 0 permeability through a positively charged cytoplasmic loop
10.1074/jbc.m116.743724 · 2017 · External reference
New Arabidopsis thaliana cytochrome c partners: a look into the elusive role of cytochrome c in programmed cell death in plants
10.1074/mcp.m113.030692 · 2013 · External reference
Structural and functional analysis of novel human cytochrome c targets in apoptosis
10.1074/mcp.m113.034322 · 2014 · External reference
A common signalosome for programmed cell death in humans and plants
10.1038/cddis.2014.280 · 2014 · External reference
Structural basis for inhibition of the histone chaperone activity of SET/TAF-Iβ by cytochrome c
10.1073/pnas.1508040112 · 2015 · External reference
Histone chaperone activity of Arabidopsis thaliana NRP1 is blocked by cytochrome c
10.1093/nar/gkw1215 · 2017 · External reference
10.1002/1873-3468.13655
10.1002/1873-3468.13655 · External reference
Nuclear cytochrome c - a mitochondrial visitor regulating damaged chromatin dynamics
10.1002/1873-3468.12959 · 2018 · External reference
10.1016/s0962-8924(00)01803-1
10.1016/s0962-8924(00)01803-1 · External reference
10.1146/annurev.biochem.73.011303.073706
10.1146/annurev.biochem.73.011303.073706 · External reference
10.1038/s41419-018-0408-1
10.1038/s41419-018-0408-1 · External reference
10.1096/fj.201801417r
10.1096/fj.201801417r · External reference
Nitration of tyrosines 46 and 48 induces the specific degradation of cytochrome c upon change of the heme iron state to high-spin
10.1016/j.bbabio.2011.09.012 · 2011 · External reference
Perturbation of the redox site structure of cytochrome c variants upon tyrosine nitration
10.1021/jp302301m · 2012 · External reference
New prospects for an old enzyme: mammalian cytochrome c is tyrosine-phosphorylated in vivo
10.1021/bi060585v · 2006 · External reference
Mammalian liver cytochrome c is tyrosine-48 phosphorylated in vivo, inhibiting mitochondrial respiration
10.1016/j.bbabio.2008.04.023 · 2008 · External reference
Nitration of solavent-exposed tyrosine 74 on cytochrome c triggers heme iron-methionine 80 bond disruption nuclear magnetic resonance and optical spectroscopy studies
10.1074/jbc.m807203200 · 2009 · External reference
Phosphoproteome analysis of functional mitochondria isolated from resting human muscle reveals extensive phosphorylation of inner membrane protein complexes and enzymes
10.1074/mcp.m110.000299 · 2011 · External reference
Regulation of respiration and apoptosis by cytochrome c Threonine 58 phosphorylation
10.1038/s41598-019-52101-z · 2019 · External reference
Structural basis of mitochondrial dysfunction in response to cytochrome c phosphorylation at tyrosine 48
10.1073/pnas.1618008114 · 2017 · External reference
10.1371/journal.pone.0023290
10.1371/journal.pone.0023290 · External reference
HuR biological function involves RRM3-mediated dimerization and RNA binding by all three RRMs
10.1093/nar/gky1138 · 2019 · External reference
Dimerization model of the C-terminal RNA recognition motif of HuR
10.1016/j.febslet.2015.03.013 · 2015 · External reference
10.1007/s10858-018-0217-y
10.1007/s10858-018-0217-y · External reference
10.1002/wrna.1372
10.1002/wrna.1372 · External reference
10.1093/nar/gkt903
10.1093/nar/gkt903 · External reference
Evolution of SH2 domains and phosphotyrosine signalling networks
10.1098/rstb.2012.0107 · 2012 · External reference
10.1093/nar/gku1267
10.1093/nar/gku1267 · External reference
10.1093/nar/gkq1104
10.1093/nar/gkq1104 · External reference
10.1093/nar/gkm902
10.1093/nar/gkm902 · External reference
10.1006/jmbi.1999.3310
10.1006/jmbi.1999.3310 · External reference
NetPhosBac - A predictor for Ser/Thr phosphorylation sites in bacterial proteins
10.1002/pmic.200800285 · 2009 · External reference
NetPhosYeast: Prediction of protein phosphorylation sites in yeast
10.1093/bioinformatics/btm020 · 2007 · External reference
10.1093/bioinformatics/bty715
10.1093/bioinformatics/bty715 · External reference
10.1074/mcp.m700574-mcp200
10.1074/mcp.m700574-mcp200 · External reference
10.1093/nar/gkg584
10.1093/nar/gkg584 · External reference
Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites
10.1002/jcc.20235 · 2005 · External reference
Predikin and PredikinDB: A computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites
10.1186/1471-2105-9-245 · 2008 · External reference
10.1186/gb-2007-8-11-r250
10.1186/gb-2007-8-11-r250 · External reference
10.1093/nar/gkm322
10.1093/nar/gkm322 · External reference
10.1186/1745-6150-2-1 · Admitted local publication
10.1002/jcc.20289
10.1002/jcc.20289 · External reference
10.1002/jcc.21287
10.1002/jcc.21287 · External reference
10.1016/j.softx.2015.06.001 · Admitted local publication
Unresolved reference
External reference
10.1371/journal.pcbi.1005659
10.1371/journal.pcbi.1005659 · External reference
10.1021/acs.jctc.5b00255
10.1021/acs.jctc.5b00255 · External reference
Investigation of the redox-dependent modulation of structure and dynamics in human cytochrome c
10.1016/j.bbrc.2015.12.079 · 2016 · External reference
10.1007/s00894-005-0028-4
10.1007/s00894-005-0028-4 · External reference
Mimicking tyrosine phosphorylation in human cytochrome c by the evolved tRNA synthetase technique
10.1002/chem.201502019 · 2015 · External reference
10.1002/jcc.20079
10.1002/jcc.20079 · External reference
10.1021/jz501780a
10.1021/jz501780a · External reference
10.1016/j.bpj.2015.08.015
10.1016/j.bpj.2015.08.015 · External reference
10.1021/ct400341p
10.1021/ct400341p · External reference
10.1073/pnas.1806833115
10.1073/pnas.1806833115 · External reference
10.1093/nar/gky427
10.1093/nar/gky427 · External reference
10.1007/978-1-4939-7231-9_4
10.1007/978-1-4939-7231-9_4 · External reference
10.1093/nar/gkh468
10.1093/nar/gkh468 · External reference
10.1016/j.csbj.2016.06.002 · Admitted local publication
Phosphomimetic substitution of cytochrome c tyrosine 48 decreases respiration and binding to cardiolipin and abolishes ability to trigger downstream caspase activation
10.1021/bi100486s · 2010 · External reference
Phosphorylation of cytochrome c threonine 28 regulates electron transport chain activity in kidney: Implications for amp kinase
10.1074/jbc.m116.744664 · 2017 · External reference
Structural and functional characterization of phosphomimetic mutants of cytochrome c at threonine 28 and serine 47
10.1016/j.bbabio.2016.01.011 · 2016 · External reference
10.1155/2020/6813405
10.1155/2020/6813405 · External reference
10.1021/acs.biochem.7b00890
10.1021/acs.biochem.7b00890 · External reference
10.1093/nar/gkw408
10.1093/nar/gkw408 · External reference
Identification of activated Tnk1 kinase in Hodgkin’s lymphoma
10.1038/leu.2009.293 · 2010 · External reference
10.1038/nchembio.1823
10.1038/nchembio.1823 · External reference
Specific nitration of tyrosines 46 and 48 makes cytochrome c assemble a non-functional apoptosome
10.1016/j.febslet.2011.12.007 · 2012 · External reference
