Research graph
References from MU-PseUDeep: A deep learning method for prediction of pseudouridine sites. Local targets link to admitted publications; unresolved targets remain external evidence.
Posttranscriptional RNA Pseudouridylation
10.1016/bs.enz.2017.02.001 · 2017 · External reference
10.1016/j.cbpa.2016.06.014
10.1016/j.cbpa.2016.06.014 · External reference
10.1016/j.tibs.2013.01.002
10.1016/j.tibs.2013.01.002 · External reference
RNA-guided isomerization of uridine to pseudouridine–pseudouridylation
10.4161/15476286.2014.972855 · 2015 · External reference
A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs
10.1093/emboj/16.15.4770 · 1997 · External reference
Enzymatic characterization and mutational studies of TruD–the fifth family of pseudouridine synthases
10.1016/j.abb.2009.07.023 · 2009 · External reference
10.1016/j.molcel.2010.01.032
10.1016/j.molcel.2010.01.032 · External reference
Two for the price of one: RNA modification enzymes as chaperones
10.1073/pnas.1617402113 · 2016 · External reference
10.1038/emboj.2010.83
10.1038/emboj.2010.83 · External reference
10.1158/0008-5472.can-09-4024
10.1158/0008-5472.can-09-4024 · External reference
10.3390/genes8110301
10.3390/genes8110301 · External reference
10.1007/s00439-016-1665-7
10.1007/s00439-016-1665-7 · External reference
Urinary excretion by cancer patients of the nucleosides N2, N2-dimethylguanosine, 1-methylinosine, and pseudouridine2
10.1093/jnci/51.1.271 · 1973 · External reference
10.1038/nature13802
10.1038/nature13802 · External reference
Unresolved reference
2015 · External reference
PPUS: a web server to predict PUS-specific pseudouridine sites
10.1093/bioinformatics/btv366 · 2015 · External reference
iRNA-PseU: Identifying RNA pseudouridine sites
10.1038/mtna.2016.37 · 2016 · External reference
Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks
10.1186/s12864-018-4889-1 · 2018 · External reference
10.1038/s41576-019-0122-6
10.1038/s41576-019-0122-6 · External reference
BERMP: a cross-species classifier for predicting m(6)A sites by integrating a deep learning algorithm and a random forest approach
10.7150/ijbs.27819 · 2018 · External reference
10.1109/embc.2018.8512780
10.1109/embc.2018.8512780 · External reference
DeepM6ASeq: prediction and characterization of m6A-containing sequences using deep learning
10.1186/s12859-018-2516-4 · 2018 · External reference
RMBase v2. 0: deciphering the map of RNA modifications from epitranscriptome sequencing data
10.1093/nar/gkx934 · 2017 · External reference
10.1093/bioinformatics/btq033
10.1093/bioinformatics/btq033 · External reference
Scikit-learn: machine learning in python
2011 · External reference
10.1093/bioinformatics/btl158
10.1093/bioinformatics/btl158 · External reference
RNAshapes: an integrated RNA analysis package based on abstract shapes
10.1093/bioinformatics/btk010 · 2005 · External reference
The RNA shapes studio
2015 · External reference
Unresolved reference
2016 · External reference
Unresolved reference
External reference
Capsule network for protein post-translational modification site prediction
10.1093/bioinformatics/bty977 · 2018 · External reference
10.1093/bioinformatics/btx496
10.1093/bioinformatics/btx496 · External reference
10.1109/ism.2015.126
10.1109/ism.2015.126 · 2015 · External reference
10.1371/journal.pone.0163962
10.1371/journal.pone.0163962 · External reference
10.1089/omi.2011.0118
10.1089/omi.2011.0118 · External reference
10.1093/bioinformatics/btq064
10.1093/bioinformatics/btq064 · External reference
10.1007/978-1-60761-175-2_12
10.1007/978-1-60761-175-2_12 · 2009 · External reference
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
2009 · External reference
10.1093/bioinformatics/btx469
10.1093/bioinformatics/btx469 · External reference
XG-PseU: an eXtreme Gradient Boosting based method for identifying pseudouridine sites
10.1007/s00438-019-01600-9 · 2020 · External reference
Inhibition of glucose utilization in isolated rat soleus muscle by pseudouridine: implications for renal failure
1993 · External reference
Enzymatic incorporation into oligonucleotides of modified nucleosides
1987 · External reference
Functional diversity of haloacid dehalogenase superfamily phosphatases from saccharomyces cerevisiae: BIOCHEMICAL STRUCTURAL, AND EVOLUTIONARY INSIGHTS
10.1074/jbc.m115.657916 · 2015 · External reference
10.1042/bj20100174
10.1042/bj20100174 · External reference
Molecular evolution of the bacterial pseudouridine-5′-phosphate glycosidase protein family
10.1111/febs.12950 · 2014 · External reference
The emerging field of epitranscriptomics in neurodevelopmental and neuronal disorders
10.3389/fbioe.2018.00046 · 2018 · External reference
Increased urinary level of oxidized nucleosides in patients with mild-to-moderate Alzheimer's disease
10.1016/j.clinbiochem.2006.11.021 · 2007 · External reference
Oxidative stress and neurodegenerative diseases: a review of upstream and downstream antioxidant therapeutic options
10.2174/157015909787602823 · 2009 · External reference
Pseudouridine modification inhibits muscleblind-like 1 (MBNL1) binding to CCUG repeats and minimally structured RNA through reduced RNA flexibility
10.1074/jbc.m116.770768 · 2017 · External reference
