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References from Microbial high throughput phenomics: The potential of an irreplaceable omics. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
External reference
10.1111/j.1574-6976.2008.00149.x
10.1111/j.1574-6976.2008.00149.x · External reference
Correlation of lactobacillus rhamnosus genotypes and carbohydrate utilization signatures determined by phenotype profiling
10.1128/aem.00851-15 · 2015 · External reference
Organic amendment type and application frequency affect crop yields, soil fertility and microbiome composition
10.1016/j.apsoil.2017.08.017 · 2017 · External reference
PheMaDB: a solution for storage, retrieval, and analysis of high throughput phenotype data
10.1186/1471-2105-12-109 · 2011 · External reference
Phenotypic and genomic survey on organic acid utilization profile of Pseudomonas mendocina strain S5.2, a vineyard soil isolate
10.1186/s13568-017-0437-7 · 2017 · External reference
10.1016/j.ijfoodmicro.2017.11.008
10.1016/j.ijfoodmicro.2017.11.008 · External reference
Disease suppressive soils: new insights from the soil microbiome
2017 · External reference
Metagenomics and the units of biological organization
10.1525/bio.2010.60.2.5 · 2010 · External reference
Transcriptional reprogramming at genome-scale of Lactobacillus plantarum WCFS1 in response to olive oil challenge
10.3389/fmicb.2017.00244 · 2017 · External reference
Influence of red mud on soil microbial communities: application and comprehensive evaluation of the Biolog EcoPlate approach as a tool in soil microbiological studies
10.1016/j.scitotenv.2017.03.266 · 2017 · External reference
How Lactobacillus plantarum shapes its transcriptome in response to contrasting habitats
10.1111/1462-2920.14372 · 2018 · External reference
Metabolism of phenolic compounds by Lactobacillus spp. during fermentation of cherry juice and broccoli puree
10.1016/j.fm.2014.08.018 · 2015 · External reference
10.1128/aem.02194-16
10.1128/aem.02194-16 · External reference
Transcriptional reprogramming and phenotypic switching associated with the adaptation of Lactobacillus plantarum C2 to plant niches
10.1038/srep27392 · 2016 · External reference
Metabolic and functional paths of lactic acid bacteria in plant foods: get out of the labyrinth
10.1016/j.copbio.2017.07.016 · 2018 · External reference
DuctApe: a suite for the analysis and correlation of genomic and OmniLogTM Phenotype Microarray data
10.1016/j.ygeno.2013.11.005 · 2014 · External reference
Integrating omics to unravel the stress-response mechanisms in probiotic bacteria: approaches, challenges, and prospects
10.1080/10408398.2015.1136805 · 2017 · External reference
Analysis on metabolic functions of stored rice microbial communities by BIOLOG ECO microplates
2018 · External reference
A Bayesian approach to analyzing phenotype microarray data enables estimation of microbial growth parameters
10.1142/s0219720016500074 · 2016 · External reference
The Application of the Biolog EcoPlate approach in ecotoxicological evaluation of dairy sewage sludge
10.1007/s12010-014-1131-8 · 2014 · External reference
In vitro increased respiratory activity of selected oral bacteria may explain competitive and collaborative interactions in the oral microbiome
10.3389/fcimb.2017.00235 · 2017 · External reference
Recent advances in microbial fermentation for dairy and health
10.12688/f1000research.10896.1 · 2017 · External reference
10.1038/nrg2897
10.1038/nrg2897 · External reference
10.1016/j.mib.2018.01.013
10.1016/j.mib.2018.01.013 · External reference
10.18637/jss.v033.i07
10.18637/jss.v033.i07 · External reference
KEGG : new perspectives on genomes, pathways, diseases and drugs
10.1093/nar/gkw1092 · 2017 · External reference
10.1016/j.ultras.2010.01.009
10.1016/j.ultras.2010.01.009 · External reference
Phenotypic profiling of Scedosporium aurantiacum, an opportunistic pathogen colonizing human lungs
10.1371/journal.pone.0122354 · 2015 · External reference
Community level physiological profiles of bacterial communities inhabiting uranium mining impacted sites
10.1016/j.ecoenv.2013.11.012 · 2014 · External reference
10.1128/aem.02602-10
10.1128/aem.02602-10 · External reference
10.1094/pbiomes-06-17-0028-r
10.1094/pbiomes-06-17-0028-r · External reference
Understanding ultrasound induced sonoporation: definitions and underlying mechanisms
10.1016/j.addr.2013.11.008 · 2014 · External reference
10.1016/j.chom.2015.03.006
10.1016/j.chom.2015.03.006 · External reference
Methionine metabolism: major pathways and enzymes involved and strategies for control and diversification of volatile sulfur compounds in cheese
10.1080/10408398.2010.536918 · 2013 · External reference
10.1111/1462-2920.13455
10.1111/1462-2920.13455 · External reference
Unresolved reference
2015 · External reference
Characterization of amygdalin-degrading Lactobacillus species
10.1111/jam.12704 · 2015 · External reference
Integrated phenotypic-genotypic approach to understand the influence of ultrasound on metabolic response of Lactobacillus sakei
2018 · External reference
The carbohydrate metabolism signature of lactococcus lactis strain A12 reveals its sourdough ecosystem origin
10.1128/aem.01560-13 · 2013 · External reference
Phenotype MicroArrayTM system in the study of fungal functional diversity and catabolic versatility
10.1016/j.resmic.2016.05.008 · 2016 · External reference
Unresolved reference
External reference
Transcriptomic-based analysis in Lactobacillus plantarum WCFS1 reveals new insights into resveratrol effects at system-level
10.1002/mnfr.201700992 · 2018 · External reference
The rpoN (sigma54) gene from Listeria monocytogenes is involved in resistance to mesentericin Y105, an antibacterial peptide from Leuconostoc mesenteroides
10.1128/jb.179.23.7591-7594.1997 · 1997 · External reference
Identifying multiple potential metabolic cycles in time-series from biolog experiments
10.1371/journal.pone.0162276 · 2016 · External reference
Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches
10.1111/j.1462-2920.2009.02119.x · 2010 · External reference
Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer
10.1186/1475-2859-10-s1-s3 · 2011 · External reference
Taxonomic structure and monitoring of the dominant population of lactic acid bacteria during wheat flour sourdough type I propagation using Lactobacillus sanfranciscensis starters
10.1128/aem.01524-08 · 2009 · External reference
Lactobacillus buchneri strain NRRL B-30929 converts a concentrated mixture of xylose and glucose into ethanol and other products
2008 · External reference
10.1016/j.fm.2016.08.009
10.1016/j.fm.2016.08.009 · External reference
Unresolved reference
External reference
10.1128/jb.00859-13
10.1128/jb.00859-13 · External reference
Opm: an R package for analysing OmniLog® phenotype microarray data
10.1093/bioinformatics/btt291 · 2013 · External reference
Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics
2012 · External reference
Novel R pipeline for analyzing biolog phenotypic microarray data
10.1371/journal.pone.0118392 · 2015 · External reference
Phenotype MicroArray analysis of cells: fulfilling the promise
10.1016/j.resmic.2016.08.003 · 2016 · External reference
Omics approaches to understand sourdough fermentation processes
10.1016/j.ijfoodmicro.2018.05.029 · 2019 · External reference
Modelling of bacterial growth curve
10.1128/aem.56.6.1875-1881.1990 · 1990 · External reference
Fermentation and proteome profiles of Lactobacillus plantarum strains during growth under food-like conditions
10.1016/j.jprot.2013.11.003 · 2014 · External reference
Fructose-rich niches traced the evolution of lactic acid bacteria toward fructophilic species
2019 · External reference
10.1128/aem.02385-16
10.1128/aem.02385-16 · External reference
Microbial ecology dynamics reveal a succession in the core microbiota involved in the ripening of pasta filata Caciocavallo Pugliese cheese
10.1128/aem.02097-14 · 2014 · External reference
The improvement of a phenotype microarray protocol for the chemical sensitivity analysis of Streptococcus thermophilus
2011 · External reference
High-Throughput Phenomics
10.1007/978-1-4939-1720-4_7 · 2015 · External reference
