Research graph
References from An information gain-based approach for evaluating protein structure models. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1126/science.181.4096.223
10.1126/science.181.4096.223 · External reference
Calculation of conformational ensembles from potentials of mena force: an approach to the knowledge-based prediction of local structures in globular proteins
10.1016/s0022-2836(05)80269-4 · 1990 · External reference
Knowledge-based potentials–back to the roots
1998 · External reference
Helmholtz free energies of atom pair interactions in proteins
10.1016/s1359-0278(96)00042-9 · 1996 · External reference
Discriminative learning for protein conformation sampling
10.1002/prot.22057 · 2008 · External reference
Fragment-free approach to protein folding using conditional neural fields
10.1093/bioinformatics/btq193 · 2010 · External reference
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions11Edited by F E. Cohen
10.1006/jmbi.1997.0959 · 1997 · External reference
Accurate modeling of protein conformation by automatic segment matching
10.1016/0022-2836(92)90964-l · 1992 · External reference
TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints
10.1073/pnas.181328398 · 2001 · External reference
Using known substructures in protein model building and crystallography
10.1002/j.1460-2075.1986.tb04287.x · 1986 · External reference
10.1186/1741-7007-5-17
10.1186/1741-7007-5-17 · External reference
10.1002/pro.5560040923
10.1002/pro.5560040923 · External reference
10.1002/pro.5560060512
10.1002/pro.5560060512 · External reference
10.1002/prot.340160110
10.1002/prot.340160110 · External reference
10.1002/(sici)1097-0134(19990815)36:3<357::aid-prot10>3.0.co;2-u
10.1002/(sici)1097-0134(19990815)36:3<357::aid-prot10>3.0.co;2-u · External reference
10.1002/1097-0134(20000815)40:3<343::aid-prot10>3.0.co;2-s
10.1002/1097-0134(20000815)40:3<343::aid-prot10>3.0.co;2-s · External reference
An automatic method for CASP9 free modeling structure prediction assessment
10.1093/bioinformatics/btr572 · 2011 · External reference
10.1093/bioinformatics/btp445
10.1093/bioinformatics/btp445 · External reference
10.12688/f1000research.3-17.v1
10.12688/f1000research.3-17.v1 · External reference
MetaMQAP: a meta-server for the quality assessment of protein models
10.1186/1471-2105-9-403 · 2008 · External reference
Evaluating the absolute quality of a single protein model using structural features and support vector machines
10.1002/prot.22275 · 2009 · External reference
10.1038/s41586-019-1923-7
10.1038/s41586-019-1923-7 · External reference
Statistical potentials extracted from protein structures: are these meaningful potentials?
10.1063/1.474725 · 1997 · External reference
Statistical potentials extracted from protein structures: how accurate are they?
10.1006/jmbi.1996.0175 · 1996 · External reference
10.1371/journal.pone.0013714
10.1371/journal.pone.0013714 · External reference
10.1002/prot.24386
10.1002/prot.24386 · External reference
10.1002/9781118866641.ch18
10.1002/9781118866641.ch18 · 2015 · External reference
Unresolved reference
1990 · External reference
Updating Subjective Probability
10.1080/01621459.1982.10477893 · 1982 · External reference
KORP: knowledge-based 6D potential for fast protein and loop modeling
10.1093/bioinformatics/btz026 · 2019 · External reference
10.1093/bioinformatics/btz587
10.1093/bioinformatics/btz587 · External reference
10.1007/978-1-0716-0270-6_5
10.1007/978-1-0716-0270-6_5 · 2020 · External reference
10.1016/j.ymeth.2019.04.012
10.1016/j.ymeth.2019.04.012 · External reference
ANDIS: an atomic angle- and distance-dependent statistical potential for protein structure quality assessment
10.1186/s12859-019-2898-y · 2019 · External reference
10.1093/bioinformatics/btv601
10.1093/bioinformatics/btv601 · External reference
10.1006/jmbi.1997.1479
10.1006/jmbi.1997.1479 · External reference
10.1002/prot.24121
10.1002/prot.24121 · External reference
Derivation of the Boltzmann principle
10.1119/1.3298372 · 2010 · External reference
MyPMFs: a simple tool for creating statistical potentials to assess protein structural models
10.1016/j.biochi.2018.05.013 · 2018 · External reference
PISCES: a protein sequence culling server
10.1093/bioinformatics/btg224 · 2003 · External reference
10.1002/prot.1094
10.1002/prot.1094 · External reference
10.1002/9781118575574
10.1002/9781118575574 · 2015 · External reference
10.1002/prot.20264
10.1002/prot.20264 · External reference
LGA: a method for finding 3D similarities in protein structures
10.1093/nar/gkg571 · 2003 · External reference
10.1110/ps.062416606
10.1110/ps.062416606 · External reference
GOAP: a generalized orientation-dependent, all-atom statistical potential for protein structure prediction
10.1016/j.bpj.2011.09.012 · 2011 · External reference
10.1016/j.jmb.2007.11.033
10.1016/j.jmb.2007.11.033 · External reference
10.1110/ps.0217002
10.1110/ps.0217002 · External reference
10.1371/journal.pone.0015386
10.1371/journal.pone.0015386 · External reference
10.1002/prot.21968
10.1002/prot.21968 · External reference
10.1110/ps.033480.107
10.1110/ps.033480.107 · External reference
10.1093/bioinformatics/btq066
10.1093/bioinformatics/btq066 · External reference
10.1093/bioinformatics/btx222
10.1093/bioinformatics/btx222 · External reference
Membrane protein orientation and refinement using a knowledge-based statistical potential
10.1186/1471-2105-14-276 · 2013 · External reference
10.1021/cr3002356
10.1021/cr3002356 · External reference
10.1103/physreve.73.041925
10.1103/physreve.73.041925 · External reference
10.1002/prot.24421
10.1002/prot.24421 · External reference
10.1021/acs.jctc.7b00125
10.1021/acs.jctc.7b00125 · External reference
DeepQA: improving the estimation of single protein model quality with deep belief networks
10.1186/s12859-016-1405-y · 2016 · External reference
ProQ3D: improved model quality assessments using deep learning
10.1093/bioinformatics/btw819 · 2017 · External reference
10.1002/pro.110430
10.1002/pro.110430 · External reference
10.1063/1.4923066
10.1063/1.4923066 · External reference
A comprehensive computational study of amino acid interactions in membrane proteins
10.1038/s41598-019-48541-2 · 2019 · External reference