Research graph
References from Joint learning of multiple gene networks from single-cell gene expression data. Local targets link to admitted publications; unresolved targets remain external evidence.
Parameter estimation of qualitative biological regulatory networks on high performance computing hardware
10.1186/s12918-018-0670-y · 2018 · External reference
Validation and selection of ode models for gene regulatory networks
10.1016/j.chemolab.2016.06.016 · 2016 · External reference
10.1093/bioinformatics/btx605
10.1093/bioinformatics/btx605 · External reference
Cancer genetic network inference using gaussian graphical models
10.1177/1177932219839402 · 2019 · External reference
10.1007/s13721-012-0008-4 · 2012 · Admitted local publication
Gene regulatory network reconstruction using conditional mutual information
2008 · External reference
High-throughput single-cell whole-genome amplification through centrifugal emulsification and emda
2019 · External reference
Network modeling of single-cell omics data: challenges, opportunities, and progresses
10.1042/etls20180176 · 2019 · External reference
10.1101/2020.01.29.925974
10.1101/2020.01.29.925974 · External reference
10.1038/nrg3833
10.1038/nrg3833 · External reference
An accurate and robust imputation method scimpute for single-cell rna-seq data
2018 · External reference
Drimpute: imputing dropout events in single cell rna sequencing data
10.1186/s12859-018-2226-y · 2018 · External reference
10.1016/j.cell.2018.05.061
10.1016/j.cell.2018.05.061 · External reference
10.12688/f1000research.16613.1
10.12688/f1000research.16613.1 · External reference
Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data
10.1186/s12859-018-2217-z · 2018 · External reference
10.1038/s41592-019-0690-6
10.1038/s41592-019-0690-6 · External reference
Eleven grand challenges in single-cell data science
10.1186/s13059-020-1926-6 · 2020 · External reference
10.1016/j.jgg.2017.03.001
10.1016/j.jgg.2017.03.001 · External reference
scdnet: a computational tool for single-cell differential network analysis
10.1186/s12918-018-0652-0 · 2018 · External reference
Cell-specific network constructed by single-cell rna sequencing data
2019 · External reference
10.1371/journal.pcbi.1006591
10.1371/journal.pcbi.1006591 · External reference
Gene regulatory network reconstruction using single-cell rna sequencing of barcoded genotypes in diverse environments
10.7554/elife.51254 · 2020 · External reference
Model selection and estimation in the gaussian graphical model
10.1093/biomet/asm018 · 2007 · External reference
10.1093/biostatistics/kxm045
10.1093/biostatistics/kxm045 · External reference
A constrained l1 minimization approach to sparse precision matrix estimation
10.1198/jasa.2011.tm10155 · 2011 · External reference
Node-based learning of multiple gaussian graphical models
2014 · External reference
Joint structural estimation of multiple graphical models
2016 · External reference
10.1093/biomet/asq060
10.1093/biomet/asq060 · External reference
The joint graphical lasso for inverse covariance estimation across multiple classes
10.1111/rssb.12033 · 2014 · External reference
10.1109/tcyb.2019.2952711
10.1109/tcyb.2019.2952711 · External reference
Investigating skewness to understand gene expression heterogeneity in large patient cohorts
10.1186/s12859-019-3252-0 · 2019 · External reference
10.1093/bioinformatics/btp616
10.1093/bioinformatics/btp616 · External reference
10.1371/journal.pone.0077503
10.1371/journal.pone.0077503 · External reference
The nonparanormal: semiparametric estimation of high dimensional undirected graphs
2009 · External reference
Regularized rank-based estimation of high-dimensional nonparanormal graphical models
2012 · External reference
A constrained l1 minimization approach for estimating multiple sparse gaussian or nonparanormal graphical models
10.1007/s10994-017-5635-7 · 2017 · External reference
Gaussian copula precision estimation with missing values
2014 · External reference
Probabilistic graphical models: principles and techniques
2009 · External reference
10.1201/9780429463976
10.1201/9780429463976 · 2018 · External reference
Statistical learning with sparsity: the lasso and generalizations
2015 · External reference
High-dimensional semiparametric gaussian copula graphical models
2012 · External reference
Sparse nonparametric graphical models
10.1214/12-sts391 · 2012 · External reference
Ordinal measures of association
10.1080/01621459.1958.10501481 · 1958 · External reference
Embracing the dropouts in single-cell rna-seq data
2018 · External reference
The meta-elliptical distributions with given marginals
10.1006/jmva.2001.2017 · 2002 · External reference
On poisson graphical models
2013 · External reference
Multivariate poisson regression with covariance structure
10.1007/s11222-005-4069-4 · 2005 · External reference
The joint graphical lasso for inverse covariance estimation across multiple classes
10.1111/rssb.12033 · 2014 · External reference
10.1109/tnb.2013.2263838
10.1109/tnb.2013.2263838 · External reference
Inferring regulatory networks from expression data using tree-based methods
10.1371/journal.pone.0012776 · 2010 · External reference
10.1093/bioinformatics/bty916
10.1093/bioinformatics/bty916 · External reference
10.1016/j.cels.2017.08.014
10.1016/j.cels.2017.08.014 · External reference
10.1038/s41592-018-0033-z
10.1038/s41592-018-0033-z · External reference
Mcimpute: matrix completion based imputation for single cell rna-seq data
10.3389/fgene.2019.00009 · 2019 · External reference
10.1111/j.1467-9868.2010.00740.x
10.1111/j.1467-9868.2010.00740.x · External reference
10.1186/s13059-016-1033-x
10.1186/s13059-016-1033-x · External reference
10.1093/nar/30.1.207
10.1093/nar/30.1.207 · External reference
10.1016/j.cell.2015.04.044
10.1016/j.cell.2015.04.044 · External reference
10.1109/embc.2018.8513444
10.1109/embc.2018.8513444 · External reference
10.1073/pnas.1103100109
10.1073/pnas.1103100109 · External reference
10.1038/74199
10.1038/74199 · External reference
Impact of fibronectin knockout on proliferation and differentiation of human infrapatellar fat pad derived stem cells
10.3389/fbioe.2019.00321 · 2019 · External reference
10.1016/j.ydbio.2004.03.029
10.1016/j.ydbio.2004.03.029 · External reference
glide/gcmis expressed and required in the scavenger cell lineage
10.1006/dbio.1997.8702 · 1997 · External reference
Expression of podocalyxin separates the hematopoietic and vascular potentials of mouse embryonic stem cell-derived mesoderm
10.1002/stem.1536 · 2014 · External reference
Stromal cell cd9 regulates differentiation of hematopoietic stem/progenitor cells
1999 · External reference
Rex1/zfp42 is dispensable for pluripotency in mouse es cells
10.1186/1471-213x-8-45 · 2008 · External reference
10.1083/jcb.200702058
10.1083/jcb.200702058 · External reference
