Research graph
References from A review of protein–protein interaction network alignment: From pathway comparison to global alignment. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1093/bioinformatics/btt071
10.1093/bioinformatics/btt071 · External reference
10.1093/bioinformatics/btt713
10.1093/bioinformatics/btt713 · External reference
10.1109/focs.2006.44
10.1109/focs.2006.44 · External reference
10.1038/75556
10.1038/75556 · External reference
10.1038/nbt924
10.1038/nbt924 · External reference
10.1007/978-3-642-01551-9_6
10.1007/978-3-642-01551-9_6 · External reference
The anatomy of a large-scale hypertextual web search engine
10.1016/s0169-7552(98)00110-x · 1998 · External reference
10.1145/3292500.3330925
10.1145/3292500.3330925 · External reference
Optimizing a global alignment of protein interaction networks
10.1093/bioinformatics/btt486 · 2013 · External reference
A multiobjective memetic algorithm for PPI network alignment
10.1093/bioinformatics/btv063 · 2015 · External reference
Protein interactions: two methods for assessment of the reliability of high throughput observations
10.1074/mcp.m100037-mcp200 · 2002 · External reference
Unresolved reference
External reference
QNet: A tool for querying protein interaction networks
10.1089/cmb.2007.0172 · 2008 · External reference
NatalieQ: A web server for protein-protein interaction network querying
10.1186/1752-0509-8-40 · 2014 · External reference
Global alignment of protein-protein interaction networks: a survey
10.1109/tcbb.2015.2474391 · 2015 · External reference
Exploring symmetric substructures in protein interaction networks for pairwise alignment
10.1007/978-3-319-56154-7_17 · 2017 · External reference
Index-based network aligner of protein-protein interaction networks
10.1109/tcbb.2016.2613098 · 2018 · External reference
Unresolved reference
External reference
10.1038/340245a0
10.1038/340245a0 · External reference
Graemlin: General and robust alignment of multiple large interaction networks
10.1101/gr.5235706 · 2006 · External reference
Automatic parameter learning for multiple local network alignment
10.1089/cmb.2009.0099 · 2009 · External reference
10.1038/nature04532
10.1038/nature04532 · External reference
10.1093/bioinformatics/btt715
10.1093/bioinformatics/btt715 · External reference
10.1126/science.1141319
10.1126/science.1141319 · External reference
NetworkBLAST: comparative analysis of protein networks
10.1093/bioinformatics/btm630 · 2008 · External reference
Unresolved reference
2008 · External reference
PrimAlign: PageRank-inspired Markovian alignment for large biological networks
10.1093/bioinformatics/bty288 · 2018 · External reference
KEGG: Kyoto encyclopedia of genes and genomes
10.1093/nar/28.1.27 · 2000 · External reference
Pathblast: a tool for alignment of protein interaction networks
10.1093/nar/gkh411 · 2004 · External reference
The intact molecular interaction database in 2012
10.1093/nar/gkr1088 · 2012 · External reference
Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence
10.1371/journal.pcbi.1000232 · 2008 · External reference
Unresolved reference
External reference
Network similarity decomposition (nsd): A fast and scalable approach to network alignment
10.1109/tkde.2011.174 · 2012 · External reference
A fast approach to global alignment of protein-protein interaction networks
10.1186/1756-0500-6-35 · 2013 · External reference
10.1098/rsif.2010.0063
10.1098/rsif.2010.0063 · External reference
10.1093/bioinformatics/btr127
10.1093/bioinformatics/btr127 · External reference
10.1609/aaai.v33i01.3301996
10.1609/aaai.v33i01.3301996 · External reference
IsoRankN: spectral methods for global alignment of multiple protein networks
10.1093/bioinformatics/btp203 · 2009 · External reference
Aligning users across social networks using network embedding
2016 · External reference
Reconstruction of phyletic trees by global alignment of multiple metabolic networks
10.1186/1471-2105-14-s2-s12 · 2013 · External reference
10.1093/bioinformatics/btx043
10.1093/bioinformatics/btx043 · External reference
10.1093/bioinformatics/btv130
10.1093/bioinformatics/btv130 · External reference
10.1093/bioinformatics/btx090
10.1093/bioinformatics/btx090 · External reference
C-GRAAL: common–neighbors–based global graph alignment of biological networks
10.1039/c2ib00140c · 2012 · External reference
Mips: Analysis and annotation of proteins from whole genomes
10.1093/nar/gkh092 · 2004 · External reference
10.1016/j.procs.2017.05.110
10.1016/j.procs.2017.05.110 · External reference
An extensive assessment of network alignment algorithms for comparison of brain connectomes
10.1186/s12859-017-1635-7 · 2017 · External reference
Optimal network alignment with graphlet degree vectors
2010 · External reference
10.1093/nar/gky1079
10.1093/nar/gky1079 · External reference
On gene ontology and function annotation
10.6026/97320630001097 · 2006 · External reference
10.1093/nar/gkq1234
10.1093/nar/gkq1234 · External reference
10.1016/s0022-5193(03)00028-6
10.1016/s0022-5193(03)00028-6 · External reference
10.1093/bioinformatics/bts592
10.1093/bioinformatics/bts592 · External reference
Semantic similarity in biomedical ontologies
10.1371/journal.pcbi.1000443 · 2009 · External reference
Human protein reference database–2009 update
10.1093/nar/gkn892 · 2009 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
A network synthesis model for generating protein interaction network families
10.1371/journal.pone.0041474 · 2012 · External reference
SMETANA: Accurate and scalable algorithm for probabilistic alignment of large-scale biological networks
10.1371/journal.pone.0067995 · 2013 · External reference
The database of interacting proteins: 2004 update
10.1093/nar/gkh086 · 2004 · External reference
MAGNA: maximizing accuracy in global network alignment
10.1093/bioinformatics/btu409 · 2014 · External reference
10.1073/pnas.0409522102
10.1073/pnas.0409522102 · External reference
10.1073/pnas.0806627105
10.1073/pnas.0806627105 · External reference
A model of large-scale proteome evolution
10.1142/s021952590200047x · 2002 · External reference
10.1609/aaai.v34i01.5354
10.1609/aaai.v34i01.5354 · External reference
10.1093/nar/gkq973
10.1093/nar/gkq973 · External reference
10.1093/nar/gkm883
10.1093/nar/gkm883 · External reference
Weakly-supervised network alignment with adversarial
2019 · External reference
Modeling of protein interaction networks
10.1159/000067642 · 2002 · External reference
MAGNA11: maximizing accuracy in global network alignment via both node and edge conservation
10.1093/bioinformatics/btv161 · 2015 · External reference
Unresolved reference
External reference
Alignment of dynamic networks
10.1093/bioinformatics/btx246 · 2017 · External reference
Unresolved reference
External reference
GADDI: Distance index based subgraph matching in biological networks
10.1145/1516360.1516384 · 2009 · External reference
SAPPER: Subgraph Indexing and approximate matching in large graphs
2010 · External reference
Graph convolutional networks: a comprehensive review
10.1186/s40649-019-0069-y · 2019 · External reference
