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References from Transcriptomic data-driven discovery of global regulatory features of rice seeds developing under heat stress. Local targets link to admitted publications; unresolved targets remain external evidence.
Response of yield and morphological characteristic of rice cultivars to heat stress at different growth stages
2014 · External reference
10.1073/pnas.0403720101
10.1073/pnas.0403720101 · External reference
Genetic Analysis of Cold Tolerance at Seedling Stage and Heat Tolerance at Anthesis in Rice (Oryza sativa L.)
10.1016/s2095-3119(12)60020-3 · 2012 · External reference
10.2135/cropsci2009.09.0516
10.2135/cropsci2009.09.0516 · External reference
More than taking the heat: crops and global change
2010 · External reference
10.1146/annurev.arplant.53.092401.134447
10.1146/annurev.arplant.53.092401.134447 · External reference
Role of model plant species
10.1007/978-1-59745-427-8_1 · 2009 · External reference
Genome relationships: the grass model in current research
10.1105/tpc.12.5.637 · 2000 · External reference
10.1101/gr.3725905
10.1101/gr.3725905 · External reference
10.3390/metabo2030614
10.3390/metabo2030614 · External reference
Genome-wide identification and analysis of early heat stress responsive genes in rice
10.1007/s12374-012-0271-z · 2012 · External reference
Genome-wide expression analysis of HSP70 family genes in rice and identification of a cytosolic HSP70 gene highly induced under heat stress
10.1007/s10142-013-0331-6 · 2013 · External reference
Genome-wide identification and analysis of genes, conserved between japonica and indica rice cultivars, that respond to low-temperature stress at the vegetative growth stage
10.3389/fpls.2017.01120 · 2017 · External reference
10.1016/j.tplants.2004.12.012
10.1016/j.tplants.2004.12.012 · External reference
10.1146/annurev.arplant.57.032905.105444
10.1146/annurev.arplant.57.032905.105444 · External reference
Inferring regulatory networks from expression data using tree-based methods
2010 · External reference
10.1073/pnas.0737574100
10.1073/pnas.0737574100 · External reference
A mixed integer linear programming (MILP) framework for inferring time delay in gene regulatory networks
2004 · External reference
BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network
10.1093/bioinformatics/btl491 · 2006 · External reference
Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR
10.1186/1471-2180-7-2 · 2007 · External reference
10.1016/j.mib.2003.09.002
10.1016/j.mib.2003.09.002 · External reference
10.1007/s13238-014-0068-6
10.1007/s13238-014-0068-6 · External reference
Analysis of global gene expression profile of rice in response to methylglyoxal indicates its possible role as a stress signal molecule
10.3389/fpls.2015.00682 · 2015 · External reference
Reconstructing directed gene regulatory network by only gene expression data
10.1186/s12864-016-2791-2 · 2016 · External reference
10.1016/j.plantsci.2015.09.018
10.1016/j.plantsci.2015.09.018 · External reference
Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for cell survival under complete submergence
10.1186/s12284-016-0124-3 · 2016 · External reference
10.1021/acssynbio.5b00202
10.1021/acssynbio.5b00202 · External reference
Using OmicsNet for Network Integration and 3D Visualization
10.1002/cpbi.69 · 2019 · External reference
A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries
10.1155/2017/6213474 · 2017 · External reference
Heat stress yields a unique MADS box transcription factor in determining seed size and thermal sensitivity
10.1104/pp.15.01992 · 2016 · External reference
10.1371/journal.pgen.1002020
10.1371/journal.pgen.1002020 · External reference
10.1093/mp/ssn024
10.1093/mp/ssn024 · External reference
OsWRKY71, a rice transcription factor, is involved in rice defense response
10.1016/j.jplph.2006.07.006 · 2007 · External reference
10.1093/mp/sss147
10.1093/mp/sss147 · External reference
Plant Kinesin-12: Localization Heterogeneity and Functional Implications
10.3390/ijms20174213 · 2019 · External reference
The APETALA2-Like Transcription Factor SUPERNUMERARY BRACT Controls Rice Seed Shattering and Seed Size
10.1105/tpc.18.00304 · 2019 · External reference
10.1111/tpj.14056
10.1111/tpj.14056 · External reference
Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice
10.1186/1471-2164-13-100 · 2012 · External reference
10.1007/s00709-011-0357-3
10.1007/s00709-011-0357-3 · External reference
A novel kinesin 13 protein regulating rice seed length
10.1093/pcp/pcq092 · 2010 · External reference
10.1016/j.gene.2005.08.009
10.1016/j.gene.2005.08.009 · External reference
10.1016/s1672-0229(06)60026-0
10.1016/s1672-0229(06)60026-0 · External reference
10.1038/cr.2008.28
10.1038/cr.2008.28 · External reference
10.1038/nature04028
10.1038/nature04028 · External reference
10.1111/jipb.12313
10.1111/jipb.12313 · External reference
Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice
10.1104/pp.104.052274 · 2004 · External reference
10.1534/genetics.114.163931
10.1534/genetics.114.163931 · External reference
Overexpression of OsGID1 Enhances the Resistance of Rice to the Brown Planthopper Nilaparvata lugens
2018 · External reference
slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8
10.1105/tpc.13.5.999 · 2001 · External reference
10.1126/science.270.5243.1804
10.1126/science.270.5243.1804 · External reference
10.1126/science.1189468
10.1126/science.1189468 · External reference
Impact of high-temperature stress on rice plant and its traits related to tolerance
10.1017/s0021859611000360 · 2011 · External reference
Expression and promoter analysis of six heat stress-inducible genes in rice
10.1155/2013/397401 · 2013 · External reference
Transient Heat Stress During Early Seed Development Primes Germination and Seedling Establishment in Rice
10.3389/fpls.2018.01768 · 2018 · External reference
10.1023/a:1014826730024
10.1023/a:1014826730024 · External reference
Impact of Humidity on Temperature-Induced Grain Sterility in Rice (Oryza sativa L)
10.1111/j.1439-037x.2008.00293.x · 2008 · External reference
Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?
10.1379/1466-1268(2001)006<0177:aathst>2.0.co;2 · 2001 · External reference
10.1016/j.bbagrm.2011.10.002
10.1016/j.bbagrm.2011.10.002 · External reference
Analysis of transactivation potential of rice (Oryza sativa L.) heat shock factors
10.1007/s00425-018-2865-2 · 2018 · External reference
Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress
10.1007/s00438-011-0638-8 · 2011 · External reference
A seed preferential heat shock transcription factor from wheat provides abiotic stress tolerance and yield enhancement in transgenic Arabidopsis under heat stress environment
10.1371/journal.pone.0079577 · 2013 · External reference
10.1104/pp.123.2.575
10.1104/pp.123.2.575 · External reference
Core genome responses involved in acclimation to high temperature
10.1104/pp.107.112060 · 2008 · External reference
10.1016/j.plantsci.2006.07.017
10.1016/j.plantsci.2006.07.017 · External reference
Regulation of Sucrose Transporters and Phloem Loading in Response to Environmental Cues
10.1104/pp.17.01088 · 2018 · External reference
Temperature induced changes in the starch components and biosynthetic enzymes of two rice varieties
10.1007/s10725-005-7361-6 · 2005 · External reference
Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray
10.1104/pp.107.098665 · 2007 · External reference
Differential responses to high temperature during maturation in heat-stress-tolerant cultivars of Japonica rice
10.1080/1343943x.2016.1140007 · 2016 · External reference
The 14-3-3 proteins associate with the plant plasma membrane H(+)-ATPase to generate a fusicoccin binding complex and a fusicoccin responsive system
1998 · External reference
14-3-3 proteins associate with the regulatory phosphorylation site of spinach leaf nitrate reductase in an isoform-specific manner and reduce dephosphorylation of Ser-543 by endogenous protein phosphatases
10.1016/s0014-5793(96)01188-x · 1996 · External reference
RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis
10.1093/database/bat027 · 2013 · External reference
10.1016/j.jplph.2015.05.003
10.1016/j.jplph.2015.05.003 · External reference
10.1242/dev.060590
10.1242/dev.060590 · External reference
10.1007/s00299-013-1438-x
10.1007/s00299-013-1438-x · External reference
10.1093/mp/ssu050
10.1093/mp/ssu050 · External reference
10.1016/j.tplants.2014.09.003
10.1016/j.tplants.2014.09.003 · External reference
10.1042/bcj20160633
10.1042/bcj20160633 · External reference
10.15252/embj.201899552
10.15252/embj.201899552 · External reference
10.1104/pp.18.00452
10.1104/pp.18.00452 · External reference
Brassinosteroid signaling in plant development and adaptation to stress
10.1242/dev.151894 · 2019 · External reference
Circadian rhythmicity in the expression of a novel light-regulated rice gene
10.1007/bf00039006 · 1993 · External reference
Circadian rhythms in the three-dimensional genome: implications of chromatin interactions for cyclic transcription
10.1186/s13148-019-0677-2 · 2019 · External reference
10.1111/j.1365-2443.2005.00892.x
10.1111/j.1365-2443.2005.00892.x · External reference
The bZIP transcription factor HY5 interacts with the promoter of the monoterpene synthase gene QH6 in modulating its rhythmic expression
10.3389/fpls.2015.00304 · 2015 · External reference
Regulation of Apetala2/Ethylene Response Factors in Plants
10.3389/fpls.2017.00150 · 2017 · External reference
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress
10.1186/1471-2164-8-242 · 2007 · External reference
Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR
10.1007/s11103-015-0369-z · 2015 · External reference
10.1016/s0079-6107(99)00010-3
10.1016/s0079-6107(99)00010-3 · External reference
10.1007/s10540-007-9047-y
10.1007/s10540-007-9047-y · External reference
Retrotransposons of rice involved in mutations induced by tissue culture
10.1073/pnas.93.15.7783 · 1996 · External reference
LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss
10.1186/1471-2164-8-218 · 2007 · External reference
10.1016/j.plantsci.2014.08.007
10.1016/j.plantsci.2014.08.007 · External reference
10.1371/journal.pone.0052030
10.1371/journal.pone.0052030 · External reference
EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments
10.1105/tpc.16.00158 · 2016 · External reference
Plant Lectins and Lectin Receptor-Like Kinases: How Do They Sense the Outside?
10.3390/ijms18061164 · 2017 · External reference
10.1093/mp/sst033
10.1093/mp/sst033 · External reference
10.1371/journal.pone.0153925
10.1371/journal.pone.0153925 · External reference
Expression of drought tolerance genes in tropical upland rice cultivars (Oryza sativa)
10.4238/2015.july.27.6 · 2015 · External reference
Identification of genes controlling aba accumulation in rice during drought stress and seed maturation
2013 · External reference
Mutation in a putative glycosyltransferase-like gene causes programmed cell death and early leaf senescence in rice
10.1186/s12284-019-0266-1 · 2019 · External reference
10.1104/pp.112.210948
10.1104/pp.112.210948 · External reference
10.1105/tpc.107.054981
10.1105/tpc.107.054981 · External reference
Dynamics of Peroxisome Homeostasis and Its Role in Stress Response and Signaling in Plants
10.3389/fpls.2019.00705 · 2019 · External reference
10.1007/s11103-011-9782-0
10.1007/s11103-011-9782-0 · External reference
10.1534/genetics.112.146100
10.1534/genetics.112.146100 · External reference
Peroxisome Function, Biogenesis, and Dynamics in Plants
10.1104/pp.17.01050 · 2018 · External reference
10.3389/fpls.2018.00855
10.3389/fpls.2018.00855 · External reference
The developmentally regulated bZIP factor ROM1 modulates transcription from lectin and storage protein genes in bean embryos
10.1046/j.1365-313x.1996.10010135.x · 1996 · External reference
Characterization of three homologous basic leucine zipper transcription factors (bZIP) of the ABI5 family during Arabidopsis thaliana embryo maturation
10.1093/jxb/eri050 · 2005 · External reference
10.1016/s1360-1385(01)02223-3
10.1016/s1360-1385(01)02223-3 · External reference
10.1104/pp.107.112821
10.1104/pp.107.112821 · External reference
A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress
10.4161/psb.21343 · 2012 · External reference
Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses
10.3389/fpls.2016.01057 · 2016 · External reference
10.1002/mrd.1080420419
10.1002/mrd.1080420419 · External reference
Abiotic stress in rice. An “omic” approach
10.1104/pp.104.900188 · 2006 · External reference
Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress
10.1186/1471-2164-14-93 · 2013 · External reference
Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses
10.1104/pp.103.025742 · 2003 · External reference
10.1146/annurev.arplant.51.1.463
10.1146/annurev.arplant.51.1.463 · External reference
10.1111/nph.12202
10.1111/nph.12202 · External reference
10.1093/bioinformatics/btu170
10.1093/bioinformatics/btu170 · External reference
10.1093/bioinformatics/btp120
10.1093/bioinformatics/btp120 · External reference
10.1093/bioinformatics/btu638
10.1093/bioinformatics/btu638 · External reference
Unresolved reference
External reference
10.1186/gb-2010-11-10-r106
10.1186/gb-2010-11-10-r106 · External reference
Differential gene expression in disease: a comparison between high-throughput studies and the literature
10.1186/s12920-017-0293-y · 2017 · External reference
10.1093/nar/gkx382
10.1093/nar/gkx382 · External reference
10.1093/nar/gkq310
10.1093/nar/gkq310 · External reference
Statistics corner: a guide to appropriate use of correlation coefficient in medical research
2012 · External reference
Ranking genome-wide correlation measurements improves microarray and RNA-seq based global and targeted co-expression networks
10.1038/s41598-018-29077-3 · 2018 · External reference
Correlation-Based Network Generation, Visualization, and Analysis as a Powerful Tool in Biological Studies: A Case Study in Cancer Cell Metabolism
10.1155/2016/8313272 · 2016 · External reference
10.1186/1471-2105-8-299
10.1186/1471-2105-8-299 · External reference
10.1101/gr.1239303
10.1101/gr.1239303 · External reference