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References from Experimental determination and data-driven prediction of homotypic transmembrane domain interfaces. Local targets link to admitted publications; unresolved targets remain external evidence.
Prediction of the human membrane proteome
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A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins
10.1093/bioinformatics/bth143 · 2004 · External reference
Helix-packing motifs in membrane proteins
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Direct-coupling analysis of residue coevolution captures native contacts across many protein families
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Structure of the transmembrane dimer interface of glycophorin A in membrane bilayers
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Ionic interactions promote transmembrane helix-helix association depending on sequence context
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The single transmembrane domains of human receptor tyrosine kinases encode self-interactions
10.1126/scisignal.2000547 · 2009 · External reference
Janus model of the Na, K-ATPase β-subunit transmembrane domain: distinct faces mediate α/β assembly and β-β homo-oligomerization
10.1016/j.jmb.2006.10.029 · 2007 · External reference
10.1016/j.febslet.2005.05.071
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PREDDIMER: A web server for prediction of transmembrane helical dimers
10.1093/bioinformatics/btt645 · 2014 · External reference
A frequent, GxxxG-mediated, transmembrane association motif is optimized for the formation of interhelical Cα-H hydrogen bonds
10.1073/pnas.1319944111 · 2014 · External reference
Evolutionary-guided de novo structure prediction of self-associated transmembrane helical proteins with near-atomic accuracy
10.1038/ncomms8196 · 2015 · External reference
10.1016/j.jmb.2016.09.005
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Prediction of transmembrane helix orientation in polytopic membrane proteins
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10.1016/j.jsb.2019.02.009
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Predictions of protein-protein Interfaces within membrane protein complexes
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Predicting protein-protein binding sites in membrane proteins
10.1186/1471-2105-10-312 · 2009 · External reference
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Transmembrane domain of myelin protein zero can form dimers: Possible implications for myelin construction
10.1021/bi701066h · 2007 · External reference
10.1016/j.jmb.2009.12.023
10.1016/j.jmb.2009.12.023 · External reference
Entrapment of water at the transmembrane helix-helix Interface of Quiescin Sulfhydryl Oxidase 2
10.1021/acs.biochem.5b01239 · 2016 · External reference
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PDBTM: Protein data bank of transmembrane proteins after 8 years
2013 · External reference
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HomPPI: a class of sequence homology based protein-protein interface prediction methods
10.1186/1471-2105-12-244 · 2011 · External reference
10.1016/j.cell.2012.04.012
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Co-evolving residues in membrane proteins
10.1093/bioinformatics/btm515 · 2007 · External reference
Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics
10.1186/1471-2148-8-327 · 2008 · External reference
Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species
10.1186/s12859-015-0677-y · 2015 · External reference
Hristova K (2012) Transmembrane helix dimerization: Beyond the search for sequence motifs
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Extremely randomized trees
10.1007/s10994-006-6226-1 · 2006 · External reference
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Modeling α-helical transmembrane domains: The calculation and use of substitution tables for lipid-facing residues
10.1002/pro.5560020106 · 1993 · External reference
Computational analysis of α-helical membrane protein structure: implications for the prediction of 3D structural models
10.1093/protein/gzh072 · 2004 · External reference
10.1002/prot.22859
10.1002/prot.22859 · External reference
10.1016/j.bbamem.2016.11.017
10.1016/j.bbamem.2016.11.017 · External reference
Side-chain entropy effects on protein secondary structure formation
10.1002/prot.20766 · 2005 · External reference
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10.1016/j.chemphyslip.2009.07.009
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Accurate prediction of helix interactions and residue contacts in membrane proteins
10.1016/j.jsb.2016.02.005 · 2016 · External reference
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10.1002/prot.22194
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10.1016/j.febslet.2014.08.031
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10.1016/j.cell.2019.02.001
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FreeContact: Fast and free software for protein contact prediction from residue co-evolution
10.1186/1471-2105-15-85 · 2014 · External reference
Understanding variable importances in forests of randomized trees
2013 · External reference