Research graph
References from Probing infectious disease by single-cell RNA sequencing: Progresses and perspectives. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
External reference
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10.1038/nprot.2016.187 · External reference
10.1126/science.aav1898
10.1126/science.aav1898 · External reference
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10.1126/science.1258367 · 2015 · External reference
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10.1038/nmeth.4220 · External reference
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10.1038/nmeth.1315 · External reference
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10.1126/science.aam8940 · External reference
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10.1038/s41596-019-0164-4 · External reference
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10.1038/nmeth.2772 · External reference
10.1186/s13059-019-1676-5
10.1186/s13059-019-1676-5 · External reference
10.1146/annurev-biodatasci-080917-013452
10.1146/annurev-biodatasci-080917-013452 · External reference
10.1038/nmeth.1778
10.1038/nmeth.1778 · External reference
10.1038/s41587-020-0469-4
10.1038/s41587-020-0469-4 · External reference
10.1186/s13059-016-0938-8
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10.1038/nri.2017.76 · External reference
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10.1126/science.1247651 · External reference
10.1016/j.ydbio.2019.11.008
10.1016/j.ydbio.2019.11.008 · External reference
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
10.1126/science.aar3131 · 2018 · External reference
Classifying drosophila olfactory projection neuron subtypes by single-cell RNA sequencing
2017 · External reference
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10.1038/s41586-018-0394-6 · External reference
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10.1038/nprot.2014.006 · External reference
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10.1016/j.celrep.2018.03.102
10.1016/j.celrep.2018.03.102 · External reference
10.1038/nmeth.4179
10.1038/nmeth.4179 · External reference
Neonatal rhesus macaques have distinct immune cell transcriptional profiles following HIV envelope immunization
2020 · External reference
Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells
10.7554/elife.47605 · 2019 · External reference
10.1038/s41590-020-0731-4
10.1038/s41590-020-0731-4 · External reference
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10.1038/s41586-018-0694-x · External reference
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10.1038/s41590-020-0762-x · External reference
10.1371/journal.ppat.1008334
10.1371/journal.ppat.1008334 · External reference
Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients
10.1007/s13238-020-00752-4 · 2020 · External reference
Memory B cell activation, broad anti-influenza antibodies, and bystander activation revealed by single-cell transcriptomics
10.1016/j.celrep.2019.12.063 · 2020 · External reference
10.1038/s41421-020-0168-9
10.1038/s41421-020-0168-9 · External reference
Dissection of influenza infection in vivo by single-cell RNA sequencing
2018 · External reference
10.1038/s41586-020-2179-y
10.1038/s41586-020-2179-y · External reference
Structural and functional basis of SARS-CoV-2 entry by using human ACE2
10.1016/j.cell.2020.03.045 · 2020 · External reference
10.1016/j.bbrc.2020.03.044
10.1016/j.bbrc.2020.03.044 · External reference
10.1164/rccm.202003-0541oc
10.1164/rccm.202003-0541oc · External reference
SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor
10.1016/j.cell.2020.02.052 · 2020 · External reference
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
2020 · External reference
10.7554/elife.58716
10.7554/elife.58716 · External reference
10.1038/s41467-019-11257-y
10.1038/s41467-019-11257-y · External reference
Unresolved reference
External reference
10.1016/j.chom.2014.12.006
10.1016/j.chom.2014.12.006 · External reference
Innate immune response to influenza virus at single-cell resolution in human epithelial cells revealed paracrine induction of interferon Lambda 1
10.1128/jvi.00559-19 · 2019 · External reference
Single-cell transcriptional dynamics of flavivirus infection
10.7554/elife.32942 · 2018 · External reference
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10.1016/s0952-7915(96)80056-2 · External reference
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10.1016/j.it.2014.09.004 · External reference
10.1371/journal.pbio.0000016
10.1371/journal.pbio.0000016 · External reference
Potent neutralizing antibodies against SARS-CoV-2 identified by high-throughput single-cell sequencing of convalescent patients' B cells
10.1016/j.cell.2020.05.025 · 2020 · External reference
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19
2020 · External reference
10.1016/j.jacc.2016.10.031
10.1016/j.jacc.2016.10.031 · External reference
Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue
10.1073/pnas.1813819115 · 2018 · External reference
10.1038/s41591-020-0752-4
10.1038/s41591-020-0752-4 · External reference
10.1016/j.ebiom.2020.102686
10.1016/j.ebiom.2020.102686 · External reference
10.1038/s41586-018-0439-x
10.1038/s41586-018-0439-x · External reference
10.1126/science.aaq1723
10.1126/science.aaq1723 · External reference
Cell type transcriptome atlas for the planarian Schmidtea mediterranea
10.1126/science.aaq1736 · 2018 · External reference
10.1038/s41586-019-1434-6
10.1038/s41586-019-1434-6 · External reference
10.1126/science.1254257
10.1126/science.1254257 · External reference
10.15252/msb.20188746
10.15252/msb.20188746 · External reference
Single-cell multi-omic integration compares and contrasts features of brain cell identity
10.1016/j.cell.2019.05.006 · 2019 · External reference
10.15252/msb.20178124
10.15252/msb.20178124 · External reference
alona: a web server for single-cell RNA-seq analysis
10.1093/bioinformatics/btaa269 · 2020 · External reference
A web server for comparative analysis of single-cell RNA-seq data
10.1038/s41467-018-07165-2 · 2018 · External reference
SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
10.1186/s13059-019-1681-8 · 2019 · External reference
McImpute: matrix completion based imputation for single cell RNA-seq data
10.3389/fgene.2019.00009 · 2019 · External reference
10.1038/s41467-018-03405-7
10.1038/s41467-018-03405-7 · External reference
RNA sequencing and transcriptome arrays analyses show opposing results for alternative splicing in patient derived samples
10.1186/s12864-017-3819-y · 2017 · External reference
10.1126/science.aaf2403
10.1126/science.aaf2403 · External reference
10.1038/nature22330
10.1038/nature22330 · External reference
10.1038/nbt.3973
10.1038/nbt.3973 · External reference
10.1038/nmeth.4380
10.1038/nmeth.4380 · External reference
Single-cell map of diverse immune phenotypes in the breast tumor microenvironment
10.1016/j.cell.2018.05.060 · 2018 · External reference
10.1038/s41587-019-0392-8
10.1038/s41587-019-0392-8 · External reference
SpatialDB: a database for spatially resolved transcriptomes
2020 · External reference
10.1126/science.aaw1219
10.1126/science.aaw1219 · External reference
10.1126/science.aaa6090
10.1126/science.aaa6090 · External reference
10.1016/j.neuron.2016.10.001
10.1016/j.neuron.2016.10.001 · External reference
10.1038/nmeth.2688
10.1038/nmeth.2688 · External reference
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10.1016/s1097-2765(02)00781-5 · External reference
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10.1038/s41592-019-0502-z · External reference
Chromatin interaction analysis using paired-end tag sequencing
2010 · External reference
10.1038/nmeth.3035
10.1038/nmeth.3035 · External reference
10.1016/j.celrep.2015.02.001
10.1016/j.celrep.2015.02.001 · External reference
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10.1186/s13059-017-1189-z · 2017 · External reference
Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing
10.1038/s41587-020-0470-y · 2020 · External reference
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10.1016/j.tibtech.2020.02.013 · External reference
Unresolved reference
External reference
10.1016/j.mam.2017.07.003
10.1016/j.mam.2017.07.003 · External reference
Circulating T cell-monocyte complexes are markers of immune perturbations
10.7554/elife.46045 · 2019 · External reference
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2020 · External reference
Scrublet: computational identification of cell doublets in single-cell transcriptomic data
2019 · External reference
DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors
2019 · External reference
Network embedding-based representation learning for single cell RNA-seq data
10.1093/nar/gkx750 · 2017 · External reference
10.1038/nbt.4096
10.1038/nbt.4096 · External reference
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10.1016/j.coisb.2018.01.003 · External reference
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10.1186/s13059-017-1269-0 · 2017 · External reference
10.1038/s41592-018-0033-z
10.1038/s41592-018-0033-z · External reference
10.1093/bioinformatics/bth007
10.1093/bioinformatics/bth007 · External reference
Recovering gene interactions from single-cell data using data diffusion
10.1016/j.cell.2018.05.061 · 2018 · External reference
10.1038/nsmb.2660
10.1038/nsmb.2660 · External reference
