Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nrg2641
10.1038/nrg2641 · External reference
10.1101/gr.136184.111
10.1101/gr.136184.111 · External reference
Selection of DNA binding sites by regulatory proteins statistical-mechanical theory and application to operators and promoters
10.1016/0022-2836(87)90354-8 · 1987 · External reference
10.1038/386569a0
10.1038/386569a0 · External reference
Determining the specificity of protein-DNA interactions
10.1038/nrg2845 · 2010 · External reference
10.1038/nrg3207
10.1038/nrg3207 · External reference
10.1093/bioinformatics/btl565
10.1093/bioinformatics/btl565 · External reference
10.1038/nrg2636
10.1038/nrg2636 · External reference
10.15252/embj.201489923
10.15252/embj.201489923 · External reference
Models of transcription factor binding: Sensitivity of activation functions to model assumptions
2009 · External reference
10.1371/journal.pgen.1001290
10.1371/journal.pgen.1001290 · External reference
10.1038/nmeth.2441
10.1038/nmeth.2441 · External reference
10.1093/nar/gku1269
10.1093/nar/gku1269 · External reference
Chromatin accessibility and the regulatory epigenome
2019 · External reference
10.1371/journal.pcbi.1005311
10.1371/journal.pcbi.1005311 · External reference
10.1016/j.cell.2015.03.017
10.1016/j.cell.2015.03.017 · External reference
10.1038/s41586-018-0549-5
10.1038/s41586-018-0549-5 · External reference
10.1126/science.abb0074
10.1126/science.abb0074 · External reference
Two-parameter mobility assessments discriminate diverse regulatory factor behaviors in chromatin
2020 · External reference
10.1038/nbt.2798
10.1038/nbt.2798 · External reference
msCentipede: modeling heterogeneity across genomic sites and replicates improves accuracy in the inference of transcription factor binding
2015 · External reference
10.1016/j.ymeth.2019.03.020
10.1016/j.ymeth.2019.03.020 · External reference
10.1101/gr.237156.118
10.1101/gr.237156.118 · External reference
Accurate prediction of cell type-specific transcription factor binding
10.1186/s13059-018-1614-y · 2019 · External reference
10.1038/s42256-019-0048-x
10.1038/s42256-019-0048-x · External reference
Definitions, methods, and applications in interpretable machine learning
10.1073/pnas.1900654116 · 2019 · External reference
Unresolved reference
External reference
Bioconductor: open software development for computational biology and bioinformatics
10.1186/gb-2004-5-10-r80 · 2004 · External reference
10.3109/10409238.2013.833891
10.3109/10409238.2013.833891 · External reference
Unresolved reference
External reference
10.1093/nar/gku1099
10.1093/nar/gku1099 · External reference
10.1101/gr.213611.116
10.1101/gr.213611.116 · External reference
Unresolved reference
External reference
10.1101/gr.229102
10.1101/gr.229102 · External reference
10.1093/nar/gkt997
10.1093/nar/gkt997 · External reference
Unresolved reference
External reference
10.1093/bioinformatics/btr064
10.1093/bioinformatics/btr064 · External reference
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btp352 · External reference
10.1186/gb-2008-9-9-r137
10.1186/gb-2008-9-9-r137 · External reference
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
2010 · External reference
Chromatin accessibility plays a key role in selective targeting of Hox proteins
10.1186/s13059-019-1721-4 · 2019 · External reference
Dna copy number evolution in drosophila cell lines
10.1186/gb-2014-15-8-r70 · 2014 · External reference
10.1016/j.tips.2013.11.005
10.1016/j.tips.2013.11.005 · External reference
Insulator function and topological domain border strength scale with architectural protein occupancy
10.1186/gb-2014-15-5-r82 · 2014 · External reference
10.1101/gr.246710.118
10.1101/gr.246710.118 · External reference
10.1101/gad.1798209
10.1101/gad.1798209 · External reference
Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the drosophila genome
10.1371/journal.pgen.1004544 · 2014 · External reference
Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture
10.1016/j.celrep.2015.02.004 · 2015 · External reference
10.1007/s00239-009-9310-x
10.1007/s00239-009-9310-x · External reference
10.1128/mcb.01748-08
10.1128/mcb.01748-08 · External reference
Evolutionarily conserved E(y)2/Sus1 protein is essential for the barrier activity of Su(Hw)-dependent insulators in drosophila
10.1016/j.molcel.2007.05.035 · 2007 · External reference
10.1371/journal.pone.0015013
10.1371/journal.pone.0015013 · External reference
Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila
10.1186/gb-2007-8-8-r167 · 2007 · External reference
10.1016/j.cell.2017.05.004
10.1016/j.cell.2017.05.004 · External reference
10.1016/j.ydbio.2005.10.032
10.1016/j.ydbio.2005.10.032 · External reference
10.1016/j.cell.2019.01.007
10.1016/j.cell.2019.01.007 · External reference
Control of hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch
2019 · External reference
Quantitative transcription factor binding kinetics at the single-molecule level
10.1016/j.bpj.2008.09.040 · 2009 · External reference
10.1016/j.gde.2005.02.006
10.1016/j.gde.2005.02.006 · External reference
Chromatin accessibility data sets show bias due to sequence specificity of the dnase i enzyme
10.1371/journal.pone.0069853 · 2013 · External reference
Facilitated diffusion buffers noise in gene expression
10.1103/physreve.90.032701 · 2014 · External reference
10.1016/0092-8674(94)90292-5
10.1016/0092-8674(94)90292-5 · External reference
10.1016/0092-8674(90)90492-w
10.1016/0092-8674(90)90492-w · External reference
Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins
10.1073/pnas.1316064110 · 2013 · External reference
10.7554/elife.21856
10.7554/elife.21856 · External reference
Development of an Illumina-based ChIP-exonuclease method provides insight into FoxA1-DNA binding properties
10.1186/gb-2013-14-12-r147 · 2013 · External reference
10.1093/bioinformatics/bts178
10.1093/bioinformatics/bts178 · External reference
10.1126/science.1221648
10.1126/science.1221648 · External reference
