Research graph
References from Synthetic gut microbiome: Advances and challenges. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.cell.2018.02.044
10.1016/j.cell.2018.02.044 · External reference
10.1111/1574-6976.12075
10.1111/1574-6976.12075 · External reference
10.1038/nature17645
10.1038/nature17645 · External reference
10.1038/nmicrobiol.2016.203
10.1038/nmicrobiol.2016.203 · External reference
10.1038/s41579-019-0264-8
10.1038/s41579-019-0264-8 · External reference
Unresolved reference
External reference
10.1038/s41579-019-0255-9
10.1038/s41579-019-0255-9 · External reference
10.1038/nature11234
10.1038/nature11234 · External reference
10.1016/j.cell.2006.02.017
10.1016/j.cell.2006.02.017 · External reference
10.3748/wjg.v21.i3.803
10.3748/wjg.v21.i3.803 · External reference
10.1038/nature12820
10.1038/nature12820 · External reference
10.1371/journal.pone.0077772
10.1371/journal.pone.0077772 · External reference
10.5056/jnm16042
10.5056/jnm16042 · External reference
Redox potential control and applications in microaerobic and anaerobic fermentations
10.1016/j.biotechadv.2012.11.005 · 2013 · External reference
An in vitro study of the effect of probiotics, prebiotics and synbiotics on the elderly faecal microbiota
10.1016/j.anaerobe.2014.03.009 · 2014 · External reference
Supplementation with Chlorella vulgaris, Chlorella protothecoides, and Schizochytrium sp. increases propionate-producing bacteria in in vitro human gut fermentation
10.1002/jsfa.10321 · 2020 · External reference
10.1016/j.foodchem.2018.04.095
10.1016/j.foodchem.2018.04.095 · External reference
10.1016/j.mib.2018.07.001
10.1016/j.mib.2018.07.001 · External reference
10.1146/annurev-food-022814-015429
10.1146/annurev-food-022814-015429 · External reference
10.1039/c2lc40074j
10.1039/c2lc40074j · External reference
10.15252/msb.20178157
10.15252/msb.20178157 · External reference
Stool substitute transplant therapy for the eradication of Clostridium difficile infection: 'RePOOPulating' the gut
10.1186/2049-2618-1-3 · 2013 · External reference
Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice
10.1073/pnas.1711596114 · 2017 · External reference
Some are more equal than others: the role of “keystone” species in the degradation of recalcitrant substrates
10.4161/gmic.23998 · 2013 · External reference
Ecology of bacteria in the human gastrointestinal tract–identification of keystone and foundation taxa
10.1186/s40168-015-0107-4 · 2015 · External reference
10.1126/science.1206025
10.1126/science.1206025 · External reference
10.1099/ijs.0.02873-0
10.1099/ijs.0.02873-0 · External reference
10.1186/1471-2164-14-873
10.1186/1471-2164-14-873 · External reference
10.1111/1462-2920.13589
10.1111/1462-2920.13589 · External reference
Formate cross-feeding and cooperative metabolic interactions revealed by transcriptomics in co-cultures of acetogenic and amylolytic human colonic bacteria
10.1111/1462-2920.14454 · 2019 · External reference
10.1007/s10482-018-1040-x
10.1007/s10482-018-1040-x · External reference
10.1073/pnas.1522193112
10.1073/pnas.1522193112 · External reference
Design and composition of synthetic fungal-bacterial microbial consortia that improve lignocellulolytic enzyme activity
10.1016/j.biortech.2016.12.058 · 2017 · External reference
Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture
10.1186/1754-6834-6-59 · 2013 · External reference
Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass
10.1073/pnas.1218447110 · 2013 · External reference
Ethanol production from hydrolysed agricultural wastes using mixed culture of Zymomonas mobilis and Candida tropicalis
10.1007/s10529-007-9493-4 · 2007 · External reference
Optimized simultaneous saccharification and co-fermentation of rice straw for ethanol production by Saccharomyces cerevisiae and Scheffersomyces stipitis co-culture using design of experiments
10.1016/j.biortech.2013.05.003 · 2013 · External reference
10.1038/nature08821
10.1038/nature08821 · External reference
Species Deletions from microbiome consortia reveal key metabolic interactions between gut microbes
10.1128/msystems.00185-19 · 2019 · External reference
10.7554/elife.01202
10.7554/elife.01202 · External reference
An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis
10.1186/s13073-016-0299-7 · 2016 · External reference
10.1038/s41564-018-0123-9
10.1038/s41564-018-0123-9 · External reference
Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
10.1038/ncomms5714 · 2014 · External reference
10.1038/nbt.3703
10.1038/nbt.3703 · External reference
10.1021/acs.jproteome.9b00806
10.1021/acs.jproteome.9b00806 · External reference
How to: establish and run a stool bank
10.1016/j.cmi.2017.05.015 · 2017 · External reference
10.1016/s0011-2240(03)00046-4
10.1016/s0011-2240(03)00046-4 · External reference
Implementing best practices and validation of cryopreservation techniques for microorganisms
10.1100/2012/805659 · 2012 · External reference
10.3920/bm2017.0164
10.3920/bm2017.0164 · External reference
10.1146/annurev-food-022814-015429
10.1146/annurev-food-022814-015429 · External reference
10.1111/j.1751-7915.2011.00308.x
10.1111/j.1751-7915.2011.00308.x · External reference
An in vitro technology platform to assess host-microbiota interactions in the gastrointestinal tract
2012 · External reference
Technology and method to study microbial growth and adhesion to host-related surfaces and the host-microbiota interaction
2014 · External reference
The HMI™ module: a new tool to study the Host-Microbiota Interaction in the human gastrointestinal tract in vitro
10.1186/1471-2180-14-133 · 2014 · External reference
10.1038/nrmicro2423
10.1038/nrmicro2423 · External reference
10.1016/j.tem.2020.02.004
10.1016/j.tem.2020.02.004 · External reference
Cryopreservation of artificial gut microbiota produced with in vitro fermentation technology
10.1111/1751-7915.12844 · 2018 · External reference
10.1038/s41385-018-0010-y
10.1038/s41385-018-0010-y · External reference
10.1038/ni.1825
10.1038/ni.1825 · External reference
10.1038/s41579-018-0029-9
10.1038/s41579-018-0029-9 · External reference
10.1038/nbt.3935
10.1038/nbt.3935 · External reference
Use of metatranscriptomics in microbiome research
10.4137/bbi.s34610 · 2016 · External reference
Complete, closed bacterial genomes from microbiomes using nanopore sequencing
10.1038/s41587-020-0422-6 · 2020 · External reference
Reproducible colonization of germ-free mice with the oligo-mouse-microbiota in different animal facilities
10.3389/fmicb.2019.02999 · 2020 · External reference
10.1186/s40168-017-0375-2
10.1186/s40168-017-0375-2 · External reference
Metaproteomics reveals growth phase-dependent responses of an in vitro gut microbiota to metformin
10.1021/jasms.0c00054 · 2020 · External reference
10.1038/nature18646
10.1038/nature18646 · External reference
10.1016/j.ymeth.2018.04.029
10.1016/j.ymeth.2018.04.029 · External reference
10.1093/nar/gkx1089
10.1093/nar/gkx1089 · External reference
The relationship between fecal bile acids and microbiome community structure in pediatric Crohn's disease
10.1038/s41396-019-0560-3 · 2020 · External reference
Concepts and software package for efficient quality control in targeted metabolomics studies: MeTaQuaC
10.1021/acs.analchem.0c00136 · 2020 · External reference
10.1093/femsre/fuy030
10.1093/femsre/fuy030 · External reference
10.1016/j.coisb.2017.12.004
10.1016/j.coisb.2017.12.004 · External reference
Modeling metabolism of the human gut microbiome
10.1016/j.copbio.2017.12.005 · 2018 · External reference
10.1186/s12263-018-0594-6
10.1186/s12263-018-0594-6 · External reference
10.1038/s41564-019-0491-9
10.1038/s41564-019-0491-9 · External reference
10.1371/journal.pcbi.1002497
10.1371/journal.pcbi.1002497 · External reference
10.1038/nature13828
10.1038/nature13828 · External reference
10.1371/journal.pcbi.1003388
10.1371/journal.pcbi.1003388 · External reference
Computer-guided design of optimal microbial consortia for immune system modulation
10.7554/elife.30916 · 2018 · External reference
10.1016/j.cmet.2015.07.001
10.1016/j.cmet.2015.07.001 · External reference
10.1016/j.cell.2006.09.042
10.1016/j.cell.2006.09.042 · External reference
Stromal reactivity differentially drives tumour cell evolution and prostate cancer progression
10.1038/s41559-020-1157-y · 2020 · External reference
10.1371/journal.pbio.2002930
10.1371/journal.pbio.2002930 · External reference
10.1371/journal.pcbi.1005539
10.1371/journal.pcbi.1005539 · External reference
10.1038/nrmicro2737
10.1038/nrmicro2737 · External reference
10.1038/nbt.1614
10.1038/nbt.1614 · External reference
10.1038/nrmicro2763
10.1038/nrmicro2763 · External reference
10.4161/gmic.22370
10.4161/gmic.22370 · External reference
Understanding the interactions between bacteria in the human gut through metabolic modeling
10.1038/srep02532 · 2013 · External reference
Agent-based modeling: methods and techniques for simulating human systems
10.1073/pnas.082080899 · 2002 · External reference
10.1016/j.ecolmodel.2008.09.004
10.1016/j.ecolmodel.2008.09.004 · External reference
Agent based modeling of human gut microbiome interactions and perturbations
10.1371/journal.pone.0148386 · 2016 · External reference
10.1371/journal.pcbi.1005544
10.1371/journal.pcbi.1005544 · External reference
10.15252/msb.20178157
10.15252/msb.20178157 · External reference
10.3390/pr3030699
10.3390/pr3030699 · External reference
Gut microbiota in toxicological risk assessment of drugs and chemicals: the need of hour
2018 · External reference
Phytochemicals that influence gut microbiota as prophylactics and for the treatment of obesity and inflammatory diseases
10.1155/2018/9734845 · 2018 · External reference
10.1016/j.envpol.2016.11.045
10.1016/j.envpol.2016.11.045 · External reference
10.1016/j.cell.2012.10.052
10.1016/j.cell.2012.10.052 · External reference
10.1038/s41586-019-1291-3
10.1038/s41586-019-1291-3 · External reference
10.1093/toxsci/kfv115
10.1093/toxsci/kfv115 · External reference
10.1021/acs.chemrestox.5b00237
10.1021/acs.chemrestox.5b00237 · External reference
Modulation of gut microbiota through dietary phytochemicals as a novel anti-infective strategy
10.2174/1570163816666191107124214 · 2020 · External reference
Schisandra chinensis ameliorates depressive-like behaviors by regulating microbiota-gut-brain axis via its anti-inflammation activity
2020 · External reference
10.1038/s41467-019-12087-8
10.1038/s41467-019-12087-8 · External reference
RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs
10.1186/s40168-020-00806-z · 2020 · External reference
Synthetic mixed-signal computation in living cells
10.1038/ncomms11658 · 2016 · External reference
10.1016/j.tig.2016.01.005
10.1016/j.tig.2016.01.005 · External reference
10.1136/gut.2008.176131
10.1136/gut.2008.176131 · External reference
10.1021/acssynbio.7b00058
10.1021/acssynbio.7b00058 · External reference
10.1016/j.cell.2017.03.041
10.1016/j.cell.2017.03.041 · External reference
Engineered interspecies amino acid cross-feeding increases population evenness in a synthetic bacterial consortium
10.1128/msystems.00352-19 · 2019 · External reference
