Research graph
References from A theoretical and generalized approach for the assessment of the sample-specific limit of detection for clinical metagenomics. Local targets link to admitted publications; unresolved targets remain external evidence.
Metagenomics: the next culture-independent game changer
10.3389/fmicb.2017.01069 · 2017 · External reference
Estimates of foodborne illness–related hospitalizations and deaths in Canada for 30 specified pathogens and unspecified agents
10.1089/fpd.2015.1966 · 2015 · External reference
10.1016/j.ijantimicag.2007.06.024
10.1016/j.ijantimicag.2007.06.024 · External reference
Beyond viruses: clinical profiles and etiologies associated with encephalitis
10.1086/509330 · 2006 · External reference
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10.1038/s41586-020-2012-7
10.1038/s41586-020-2012-7 · External reference
A variegated squirrel bornavirus associated with fatal human encephalitis
10.1056/nejmoa1415627 · 2015 · External reference
Fatal encephalitic borna disease virus 1 in solid-organ transplant recipients
10.1056/nejmc1803115 · 2018 · External reference
10.1080/1040841x.2019.1681933
10.1080/1040841x.2019.1681933 · External reference
A versatile sample processing workflow for metagenomic pathogen detection
10.1038/s41598-018-31496-1 · 2018 · External reference
10.1093/bioinformatics/bty595
10.1093/bioinformatics/bty595 · External reference
10.1101/gr.171934.113
10.1101/gr.171934.113 · External reference
RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets
10.1186/s12859-015-0503-6 · 2015 · External reference
10.1038/s41576-019-0113-7
10.1038/s41576-019-0113-7 · External reference
10.1128/jcm.00466-19
10.1128/jcm.00466-19 · External reference
10.3390/genes10090655
10.3390/genes10090655 · External reference
10.1038/s41564-018-0349-6
10.1038/s41564-018-0349-6 · External reference
10.1101/gr.238170.118
10.1101/gr.238170.118 · External reference
10.1056/nejmoa1803396
10.1056/nejmoa1803396 · External reference
Quality control implementation for universal characterization of DNA and RNA viruses in clinical respiratory samples using single metagenomic next-generation sequencing workflow
2018 · External reference
10.1093/cid/cix296
10.1093/cid/cix296 · External reference
Unbiased detection of respiratory viruses by use of RNA sequencing-based metagenomics: a systematic comparison to a commercial PCR panel
10.1128/jcm.03060-15 · 2016 · External reference
Comparative analysis of whole-genome sequence of African swine fever virus Belgium 2018/1
10.3201/eid2506.190286 · 2019 · External reference
Targeted enrichment for pathogen detection and characterization in three felid species
10.1128/jcm.01463-16 · 2017 · External reference
Depletion of human DNA in spiked clinical specimens for improvement of sensitivity of pathogen detection by next-generation sequencing
10.1128/jcm.03050-15 · 2016 · External reference
10.1001/jamaneurol.2018.0463
10.1001/jamaneurol.2018.0463 · External reference
10.1126/science.1093857
10.1126/science.1093857 · External reference
10.1007/s00285-012-0586-x
10.1007/s00285-012-0586-x · External reference
10.1007/s00248-006-9201-2
10.1007/s00248-006-9201-2 · External reference
Novel picornavirus in lambs with severe encephalomyelitis
10.3201/eid2505.181573 · 2019 · External reference
10.1016/s1473-3099(19)30546-8
10.1016/s1473-3099(19)30546-8 · External reference
The use of next generation sequencing in the diagnosis and typing of respiratory infections
10.1016/j.jcv.2015.06.082 · 2015 · External reference
Validation of metagenomic next-generation sequencing tests for universal pathogen detection
10.5858/arpa.2016-0539-ra · 2017 · External reference
Relatives of rubella virus in diverse mammals
10.1038/s41586-020-2812-9 · 2020 · External reference
10.3390/v12040448
10.3390/v12040448 · External reference
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Two new real-time quantitative reverse transcription polymerase chain reaction assays with unique target sites for the specific and sensitive detection of lineages 1 and 2 West Nile virus strains
10.1177/104063871002200515 · 2010 · External reference
10.1373/clinchem.2008.112797
10.1373/clinchem.2008.112797 · External reference
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Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach
10.1128/jcm.00273-11 · 2011 · External reference
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
10.1093/nar/gkx932 · 2017 · External reference
Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples
10.1016/j.jviromet.2020.113916 · 2020 · External reference
Towards precision quantification of contamination in metagenomic sequencing experiments
10.1186/s40168-019-0678-6 · 2019 · External reference
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
10.1186/s40168-018-0605-2 · 2018 · External reference
10.1016/j.mcp.2006.08.001
10.1016/j.mcp.2006.08.001 · External reference
Shedding light: the importance of reverse transcription efficiency standards in data interpretation
10.1016/j.bdq.2018.12.002 · 2019 · External reference
Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses
10.1016/j.jviromet.2020.113865 · 2020 · External reference
Highly efficient library preparation for Ion Torrent sequencing using Y-adapters
10.2144/btn-2019-0035 · 2019 · External reference
