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References from Automated methods for cell type annotation on scRNA-seq data. Local targets link to admitted publications; unresolved targets remain external evidence.
Past and present
1890 · External reference
How transcription factors drive choice of the T cell fate
2020 · External reference
10.1016/j.stem.2020.09.011
10.1016/j.stem.2020.09.011 · External reference
10.1038/s41587-020-0469-4
10.1038/s41587-020-0469-4 · External reference
The promise of single-cell sequencing
10.1038/nmeth.2769 · 2014 · External reference
10.1016/j.molcel.2015.04.005
10.1016/j.molcel.2015.04.005 · External reference
BioNumbers the database of key numbers in molecular and cell biology
10.1093/nar/gkp889 · 2009 · External reference
10.1101/gr.247759.118
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10.1146/annurev-cancerbio-030419-033413
10.1146/annurev-cancerbio-030419-033413 · External reference
10.1038/s41576-019-0093-7
10.1038/s41576-019-0093-7 · External reference
A comprehensive library of human transcription factors for cell fate engineering
2020 · External reference
10.1038/nature18323
10.1038/nature18323 · External reference
10.1038/s41586-018-0744-4
10.1038/s41586-018-0744-4 · External reference
Cell types of the human retina and its organoids at single-cell resolution
10.1016/j.cell.2020.08.013 · 2020 · External reference
Molecular architecture of the mouse nervous system
10.1016/j.cell.2018.06.021 · 2018 · External reference
10.1038/nbt.4096
10.1038/nbt.4096 · External reference
10.15252/msb.20188746
10.15252/msb.20188746 · External reference
10.1038/s41576-018-0088-9
10.1038/s41576-018-0088-9 · External reference
Using transcriptomic analysis to assess double- strand break repair activity: Towards precise in vivo genome editing
2020 · External reference
10.12688/f1000research.18490.1
10.12688/f1000research.18490.1 · External reference
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
10.1186/s13059-020-1949-z · 2020 · External reference
10.1093/bfgp/elaa003
10.1093/bfgp/elaa003 · External reference
scCATCH: automatic annotation on cell types of clusters from single-cell RNA sequencing data
2020 · External reference
SCSA: a cell type annotation tool for single-cell RNA-seq data
2020 · External reference
Unresolved reference
External reference
10.1038/s41592-019-0529-1
10.1038/s41592-019-0529-1 · External reference
10.1038/nmeth.4644
10.1038/nmeth.4644 · External reference
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10.1038/s41590-018-0276-y · External reference
10.1093/nar/gkz543
10.1093/nar/gkz543 · External reference
10.1093/bioinformatics/btz292
10.1093/bioinformatics/btz292 · External reference
10.12688/f1000research.22969.2
10.12688/f1000research.22969.2 · External reference
CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments
10.1186/s12859-020-3538-2 · 2020 · External reference
10.1371/journal.pone.0205499
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10.1101/456129
10.1101/456129 · External reference
10.1093/bioinformatics/btz295
10.1093/bioinformatics/btz295 · External reference
SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles
2019 · External reference
SingleCellNet: a computational tool to classify single cell RNA-Seq data across platforms and across species
2019 · External reference
10.1038/s41592-019-0535-3
10.1038/s41592-019-0535-3 · External reference
ScPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
10.1186/s13059-019-1862-5 · 2019 · External reference
10.1093/bioinformatics/btz592
10.1093/bioinformatics/btz592 · External reference
10.1101/810234
10.1101/810234 · External reference
scClassify: sample size estimation and multiscale classification of cells using single and multiple reference
2020 · External reference
10.1101/532895
10.1101/532895 · External reference
10.1101/2020.02.17.947390
10.1101/2020.02.17.947390 · External reference
10.1016/j.isci.2020.100914
10.1016/j.isci.2020.100914 · External reference
10.1101/2020.06.04.132324
10.1101/2020.06.04.132324 · External reference
10.1038/s41586-018-0590-4
10.1038/s41586-018-0590-4 · External reference
Mapping the mouse cell atlas by microwell-seq
2018 · External reference
Science forum: the human cell atlas
2017 · External reference
10.1093/nar/gky900
10.1093/nar/gky900 · External reference
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data
10.1093/database/baz046 · 2019 · External reference
10.1093/nar/gky939
10.1093/nar/gky939 · External reference
10.1186/1471-2164-14-632
10.1186/1471-2164-14-632 · External reference
10.1016/j.cell.2016.11.007
10.1016/j.cell.2016.11.007 · External reference
10.1101/gr.255679.119
10.1101/gr.255679.119 · External reference
10.1038/nature11247
10.1038/nature11247 · External reference
10.1038/s41586-019-1506-7
10.1038/s41586-019-1506-7 · External reference
10.1093/nar/gkw995
10.1093/nar/gkw995 · External reference
10.1093/bioinformatics/bty1044
10.1093/bioinformatics/bty1044 · External reference
Visualizing data using t-SNE
2008 · External reference
10.1038/nbt.4314
10.1038/nbt.4314 · External reference
Machine learning: a review of classification and combining techniques
10.1007/s10462-007-9052-3 · 2006 · External reference
10.1016/j.cell.2014.07.020
10.1016/j.cell.2014.07.020 · External reference
Automatic construction of decision trees from data: a multi-disciplinary survey
10.1023/a:1009744630224 · 1998 · External reference
10.1093/bioinformatics/bty260
10.1093/bioinformatics/bty260 · External reference
10.1038/nbt.4233
10.1038/nbt.4233 · External reference
Deep learning in the biomedical applications: recent and future status
10.3390/app9081526 · 2019 · External reference
Unresolved reference
External reference
10.1186/s13059-019-1795-z
10.1186/s13059-019-1795-z · External reference
10.1093/bib/bbz096
10.1093/bib/bbz096 · External reference
10.1038/nbt.3973
10.1038/nbt.3973 · External reference
10.1038/nmeth.4380
10.1038/nmeth.4380 · External reference
10.1038/nmeth.3370
10.1038/nmeth.3370 · External reference
ScNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells e
10.1038/s41467-018-03149-4 · 2018 · External reference
10.1038/s41594-019-0323-x
10.1038/s41594-019-0323-x · External reference
10.1038/s41587-019-0290-0
10.1038/s41587-019-0290-0 · External reference
Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity
2019 · External reference
